Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01469 ATGACTCAGTGCAGTGACCCTGAAAACAATCATAACATAGCAGTGGAGGGAAGAAAGGACAGTTTAATTAGAACTTGTCCTACATGTGGTCATCATATCAAATGCCAAGATCAGGCTGGTGGAATTCATGATTTACCTGGATTACCTGCTGGAGTGAAGTTTGATCCAACAGATCAAGAGATTCTTGAACATTTGGAAGCCAAGGTGCGGTCTGATATTCATAAGCTTCACCCTCTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAGAATGGAATCTGCTATACTCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGCCTAATCCGCCATTTCTTTCACCGACCTTCCAAAGCATATACAACAGGAACAAGAAAAAGGAGAAAGGTGCATTCTGATGAGGATGGTAGTGAGACTCGTTGGCACAAAACAGGTAAGACTAGACCAGTCTACAACAAAGCCAAGTTGAAAGGTTACAAGAAAATCCTTGTACTTTACACCAACTATGGAAAGCAAAGAAAGCCAGAAAAAACAAACTGGGTCATGCATCAATACCACCTTGGAAGTGATGAAGAGGAGAAGGAAGGGGAACTAGTTGTCTCCAAAGTTTTCTATCAAACCCAACCTAGACAATGTGGTTCAATAATGAAAGACTCAGATCCTGAAAAACCTATGAAGGGTCATCAAAGCATGCATGAGATAATCAATAACAAGGATAATGGGTTAGTTGAGTACTACCATTCAAATTTCATATCATTTGATCAAGGGAGCCAACATAGATCTAGCAGTGCTCAAGTCATTTCCCATTTTCCTGTCCATGATGGTGCTCCTTTCATTCCTTGA 846 0.409 MTQCSDPENNHNIAVEGRKDSLIRTCPTCGHHIKCQDQAGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNKAKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCGSIMKDSDPEKPMKGHQSMHEIINNKDNGLVEYYHSNFISFDQGSQHRSSSAQVISHFPVHDGAPFIP* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01469 281 ProSiteProfiles NAC domain profile. 48 207 IPR003441 GO:0003677|GO:0006355
Rops3g01469 281 MobiDBLite consensus disorder prediction 122 147 - -
Rops3g01469 281 FunFam NAC domain-containing protein 73 57 211 - -
Rops3g01469 281 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 21 232 IPR044799 GO:0003700
Rops3g01469 281 Gene3D NAC domain 57 211 IPR036093 GO:0003677|GO:0006355
Rops3g01469 281 MobiDBLite consensus disorder prediction 127 146 - -
Rops3g01469 281 SUPERFAMILY NAC domain 43 207 IPR036093 GO:0003677|GO:0006355
Rops3g01469 281 Pfam No apical meristem (NAM) protein 49 188 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01469 Rops-Chr3 21860574 21863139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01469 1 281 NAC Transcription Factor Family AT4G28500 58.730 1.40e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops3g01469 NAM 1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01469 - - gmx:100797459 537.339