Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01468 ATGTTCACCGTCTCTGACAGCAGGACCAAGAGTCGCGTTTTTGGGCTCCCTAACCATTCTCTTCGACATGATCTACACACTGAGGGGGGTCTCAAATCCCTTGATGAATTCCTCTCTGGGAAGACCTATATTTCTGGGGATCAATTGACAAAGGATGATATCAAAGTGTATGCCGCTGTTTTGGAAAAACCAGGTGACTCTTTTCCCAATGCTGCCAAGTGGTACGATGTTGTCTCTTCACAGCTTGCTGCAAGCTTCCCTGGGAATGCTCAAGGGGTAAATTTCAGTCGCAATGCTGCTCTGCTGCTCACCGCACTGACCAAAGCGGATGCTGCTGTGGAAGATGATGATCTTGATCTCTTTGGTGATGAAACAGAGGAAAGGGAGGCTGCTAAAAAGACTGCCAAGAAGAAAGAAAGTGGCAAGTCTTCCGTTCTGCTTGATGTTAAGCCTTGGGACGACGAGACAGACATGAAGAAGCTGGAAGAGGCGGTTCGTAGCGTTCAGATGCCTGGTTTGTTATGGGGAGCATCCAAACTGGTTCCAGTGGGATATGGGATCAAGAAGCTGCAGATCATGATGGCTATTGTTGATGACCTTGTTTCTGTGGACACTCTCATTGAGGAACACCTGACAGTTGAGCCATGCAATGAATATATCCAAAGCTGTGACATTGTTGCACCCAACAAATTCGTGGGAGGGAGCCACGACAACATCCACTGGTGCTAA 729 0.4787 MFTVSDSRTKSRVFGLPNHSLRHDLHTEGGLKSLDEFLSGKTYISGDQLTKDDIKVYAAVLEKPGDSFPNAAKWYDVVSSQLAASFPGNAQGVNFSRNAALLLTALTKADAAVEDDDLDLFGDETEEREAAKKTAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMPGLLWGASKLVPVGYGIKKLQIMMAIVDDLVSVDTLIEEHLTVEPCNEYIQSCDIVAPNKFVGGSHDNIHWC* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01468 242 SMART EF1_GNE_2 142 231 IPR014038 GO:0003746|GO:0006414
Rops3g01468 242 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 26 230 - -
Rops3g01468 242 SUPERFAMILY GST C-terminal domain-like 27 83 IPR036282 -
Rops3g01468 242 CDD EF1B 140 231 IPR014038 GO:0003746|GO:0006414
Rops3g01468 242 Gene3D - 135 231 IPR014717 -
Rops3g01468 242 Gene3D - 17 91 - -
Rops3g01468 242 SUPERFAMILY eEF-1beta-like 139 230 IPR036219 -
Rops3g01468 242 Pfam EF-1 guanine nucleotide exchange domain 144 230 IPR014038 GO:0003746|GO:0006414
Rops3g01468 242 FunFam Elongation factor 1-beta 1 like 136 231 - -
Rops3g01468 242 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 114 122 IPR001326 GO:0003746|GO:0005853|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01468 Rops-Chr3 21824656 21825384 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01468 24 231 Eukaryotic Initiation Factors Gene Family AT5G12110 69.820 1.91e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01468 K03232 - gmx:100500082 317.39