Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01467 ATGAAGGTTAAAGCTGACAGAGATGAGTCATCCCCATATGCTGCTATGCTTGCAGCACAAGATGTTGCTGCCAGATGCAAGGAGCTGGGCCTAACAGCTCTTCATATCAAGCTTCGTGCAACTAGAGGACACAAGCCGAAAACACCTGGCCTTGGTGCTCAGTTCTGCTCTCCGTGCCTTGGCTCGGTCAGGAGTGAAAGCTGGTCGCATAGAGGATGTGACTCCAATTCCTTCGGATAG 240 0.5125 MKVKADRDESSPYAAMLAAQDVAARCKELGLTALHIKLRATRGHKPKTPGLGAQFCSPCLGSVRSESWSHRGCDSNSFG* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01467 79 Pfam Ribosomal protein S11 1 54 IPR001971 GO:0003735|GO:0005840|GO:0006412
Rops3g01467 79 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 1 54 IPR001971 GO:0003735|GO:0005840|GO:0006412
Rops3g01467 79 SUPERFAMILY Translational machinery components 3 55 - -
Rops3g01467 79 Gene3D Ribosomal protein S11 1 69 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01467 Rops-Chr3 21824317 21824556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01467 1 54 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 85.185 5.27e-28 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01467 K02955 - gmx:100780604 98.2117