Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01466 ATGTTCACCGTTTCTGACAGCAGGACCAAGAGTCGCGTTTTTGGGCTCCCTAACCATTCTCTTCGACATGATCTACACACTGAGGGGGGTCTCAAATCCCTTGATGAATTCCTCTCTGGGAAGACCTATATTTCTGGGGATCAATTGACAAAGGATGATATCAAAGTGTATGCCGCTGTTTTGGAAAAACCAGGTGACTCTTTTCCCAATGCTGCCAAGTGGTACGATGTTGTCTCTTCACAGCTTGCTGCAAGCTTCCCTGGGAATGCTCAAGGGGTAAATTTCAGTCGCAATGCTGCTCCTGCTGCTCCAGCTGCACCAGCCAAAGCGGATGCTGCTGTGGAAGATGATGATCTTGATCTCTTTGGTGATGAAACAGAGGAGGATAAGAAGGCAACAGAGGAAAGGGAGGCTGCTAAAAAGACTGCCAAGAAGAAAGAAAGTGGCAAGTCTTCCGTTCTGCTTGATGTTAAGCCTTGGGACGACGAGACAGACATGAAGAAGCTGGAAGAGGCGGTTCGTAGCGTTCAGATGCCTGGTTTGTTATGGGGAGCATCCAAACTGGTTCCAGTGGGATATGGGATCAAGAAGCTGCAGATCATGATGACTATTGTTGATGACCTTGTTTCTGTGGACACTCTCATTGAGGAACACCTGACAGTTGAGCCATGCAATGAATATATCCAAAGCTGTGACATTGTTGCACCCAACAAATTCGTGGGAGGGAGCCACGACAACATCCACTGGTGCTAA 753 0.4781 MFTVSDSRTKSRVFGLPNHSLRHDLHTEGGLKSLDEFLSGKTYISGDQLTKDDIKVYAAVLEKPGDSFPNAAKWYDVVSSQLAASFPGNAQGVNFSRNAAPAAPAAPAKADAAVEDDDLDLFGDETEEDKKATEEREAAKKTAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLIEEHLTVEPCNEYIQSCDIVAPNKFVGGSHDNIHWC* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01466 250 SMART EF1_GNE_2 150 239 IPR014038 GO:0003746|GO:0006414
Rops3g01466 250 CDD EF1B 148 239 IPR014038 GO:0003746|GO:0006414
Rops3g01466 250 MobiDBLite consensus disorder prediction 124 145 - -
Rops3g01466 250 FunFam Elongation factor 1-beta 1 like 144 239 - -
Rops3g01466 250 SUPERFAMILY eEF-1beta-like 147 238 IPR036219 -
Rops3g01466 250 SUPERFAMILY GST C-terminal domain-like 27 83 IPR036282 -
Rops3g01466 250 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 26 238 - -
Rops3g01466 250 Gene3D - 143 239 IPR014717 -
Rops3g01466 250 Pfam EF-1 guanine nucleotide exchange domain 152 238 IPR014038 GO:0003746|GO:0006414
Rops3g01466 250 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 115 123 IPR001326 GO:0003746|GO:0005853|GO:0006414
Rops3g01466 250 MobiDBLite consensus disorder prediction 125 145 - -
Rops3g01466 250 Gene3D - 17 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01466 Rops-Chr3 21812447 21813199 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01466 24 239 Eukaryotic Initiation Factors Gene Family AT5G12110 72.973 6.26e-102 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01466 K03232 - gmx:100500082 319.701