Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01465 ATGCATCTCTTTGTTGTGTTCTTACTCTTCTTTCTCTCTCCTCTGCCACTCACTCTCTCTCTAAACCAAGAAGGCCTATTCCTCCTAAGTGCCAAGGAGGATCTATCGGACCCAGACAACTCCCTTGCCACGTGGCACAACGCCGACGCCACGCCCTGCCGGTGGCGCGGCATCACCTGCGACCCAGTCACCGGTGCCGTCACAGCCGTGAACCTCTCATTCTTCGGCCTCTCCGGTCCCTTCCCCGGCGTCCTCTGCCGCCTCCCTTCCCTCACCTCTCTCTTCCTCTCCGACAACTTCATCACCTCCACCCTCCCCGCCGGCAACCTCGCCGCCTGCAGCAGTCTCCGGCACCTCGACCTCTCTCAAAACGCCCTCGTGGGCCCCATCCCGGAAACCCTCTCACAAATCACCACCCTCCGACACCTCGACCTCTCGTTCAACAACCTCTCCGGCGACATTCCGGCGAGGCTCGGCCACCTCCGGCAACTCGAGTCTCTCATCCTCGTCTTCAACTTCCTCAACGGAACAATACCCAGTTCTTTAGGAAACATTTCAACGTTGAAGGAGCTTCAACTCGCTTACAACCCGTTCACCCCGAGTCAAATACCGAGTCAACTCGGTAACCTGACTCAACTTGAGGACCTTTGGCTCGCTGGGTGCAATCTCGTGGGTCCCATTCCAACCTCACTGGGTAACCTCACACGTCTCAAGAACCTTGATTTGTCACAAAACAACCTTACCGGGAACATACCGGAATCTTTCGCCGGATTAAATAGCGTGACTCAAATTGAACTCTTCAGCAACTCACTCTCTGGCGAGTTACCCGCCAGAATTTCGAACCTGACTCAGCTGTTACGCTTCGACGCGTCGATGAACAAGTTAACTGGGACGATTCCACCCGGGTTGTGCGAGTTGAAGCTAGCTTCGCTCAATTTATATGAAAACCATCTCGAAGGTTCGTTACCGGAGAGCATAGCTCGTTCTCCGAATCTCTATGAACTCAAATTGTTCAACAATAAGCTCGAAGGGAAGTTGCCAAGTGATTTAGGGAGCAATTCTCCGTTGCAGCACATTGATGTTTCATATAACCGTTTTTCCGGCGAGATTCCGGCGAACTTGTGCCGGAGGGGACAGTTCGAGGAACTCATTTTGCTTTACAATTCATTTTCCGGGAAAATCCCCGAGAGTCTCGGAAATTGCAAGAGCTTAACAAGGGTTCGGTTAAGGAATAACAAACTCTCTGGTGTTGTTCCTGATGCTTTCTGGGGTTTGCCACGTTTGTATTTGCTTGAGCTTATGGATAATTCTCTTTCTGGGTCTATTTCTAATGCGATTTCTGGTGCTTATAATCTTTCAATTTTGTTACTTTCCAAGAACAAGTTTTCTGGGTCGATTCCTGATGAAATTGGGTTGTTGGATGGTCTTTTAGAATTTTCTGCTAGCCATAACAATCTTTCGGGTCGGATTCCGGCGAGTATGTTCAAGTTGGGTCAGTTAGGTAGTGTTGATCTCAGTTATAATCAACTTTCTGGAGAAATTCTGGGTGGAATTGATCATTGGACTAAGCTCACTGAACTTAATTTGGCAAATAATAGGTTTGATGGTAGAATTTCAAGTGAATTAGGAAGCTTGCCTATGCTTAATAATCTTGATCTTTCTAGCAACAACTTCTCTGGTGAAATTCCACCCCAGTTGCAAAATTTGAAGCTCTATAAGCTGAATTTGTCAAACAACAAGCTCTATGGGGATATTCCTCCCCTTTTTGCCAATGACAAGTATAGGATGAGTTTTGTAGGAAATCCTGGCCTCTGTGACCATCTTTCTGGGCTTTGTTCAAGCTCTGGTGAGAGGAAGCGCCAGAGGAACCACAAGAAGTTGAAAAAGCGGTTCAACATTTCTAAGTGGAGGTCATTTCATAAGCTGGGGTTTAGTGAGTTTGAGGTTGTTAAATTGCTGAGTGAAGACAATGTAATAGGAAGTGGAGCATCTGGGAAGGTCTACAAGGTAGTGCTTAGCAATGGTGAGGTGGTGGCAGCGAAAAAATTGTGGGGAGCATCTAAGAAAGTGAATGGAGTCAGCCAAGGGACAGAATCAATGTCTGTGATTGCAGGATCTTATGGCTACATTGCACCAGAATATGCTTATACTCTTAGGGTGAATGAAAAGAGTGATATTTATAGCTTTGGTGTGGTCATTTTGGAGTTGGTAACAGGAAAACCTCCTATTGATGCAGAGTATGGGGAAAGTGATTTGGTAAAATGGGTTTCCTCCACATTGGAACAGAAAGGACTGGATTATGTGATTGATCCTACTTTAGATTTCAAATACAAGGAAGAAATCAGCAAGGTACTGAGTGTGGGGCTTCAATGCACAAGCTCTCTTCCAATAACACGCCCTGCAATGAGGAGTGTGGTGAAAATGCTTCAGGAGGTAAAAACGGTTCCCAAAACACTCTTATCACCATGA 2469 0.469 MHLFVVFLLFFLSPLPLTLSLNQEGLFLLSAKEDLSDPDNSLATWHNADATPCRWRGITCDPVTGAVTAVNLSFFGLSGPFPGVLCRLPSLTSLFLSDNFITSTLPAGNLAACSSLRHLDLSQNALVGPIPETLSQITTLRHLDLSFNNLSGDIPARLGHLRQLESLILVFNFLNGTIPSSLGNISTLKELQLAYNPFTPSQIPSQLGNLTQLEDLWLAGCNLVGPIPTSLGNLTRLKNLDLSQNNLTGNIPESFAGLNSVTQIELFSNSLSGELPARISNLTQLLRFDASMNKLTGTIPPGLCELKLASLNLYENHLEGSLPESIARSPNLYELKLFNNKLEGKLPSDLGSNSPLQHIDVSYNRFSGEIPANLCRRGQFEELILLYNSFSGKIPESLGNCKSLTRVRLRNNKLSGVVPDAFWGLPRLYLLELMDNSLSGSISNAISGAYNLSILLLSKNKFSGSIPDEIGLLDGLLEFSASHNNLSGRIPASMFKLGQLGSVDLSYNQLSGEILGGIDHWTKLTELNLANNRFDGRISSELGSLPMLNNLDLSSNNFSGEIPPQLQNLKLYKLNLSNNKLYGDIPPLFANDKYRMSFVGNPGLCDHLSGLCSSSGERKRQRNHKKLKKRFNISKWRSFHKLGFSEFEVVKLLSEDNVIGSGASGKVYKVVLSNGEVVAAKKLWGASKKVNGVSQGTESMSVIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKPPIDAEYGESDLVKWVSSTLEQKGLDYVIDPTLDFKYKEEISKVLSVGLQCTSSLPITRPAMRSVVKMLQEVKTVPKTLLSP* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01465 822 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Rops3g01465 822 Pfam Leucine rich repeat 212 271 IPR001611 GO:0005515
Rops3g01465 822 Pfam Leucine rich repeat 89 150 IPR001611 GO:0005515
Rops3g01465 822 Pfam Leucine rich repeat 382 438 IPR001611 GO:0005515
Rops3g01465 822 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 21 185 - -
Rops3g01465 822 PRINTS Leucine-rich repeat signature 234 247 - -
Rops3g01465 822 PRINTS Leucine-rich repeat signature 140 153 - -
Rops3g01465 822 Gene3D Ribonuclease Inhibitor 21 306 IPR032675 -
Rops3g01465 822 SMART LRR_typ_2 88 112 IPR003591 -
Rops3g01465 822 SMART LRR_typ_2 137 161 IPR003591 -
Rops3g01465 822 SMART LRR_typ_2 545 568 IPR003591 -
Rops3g01465 822 SMART LRR_typ_2 234 257 IPR003591 -
Rops3g01465 822 SMART LRR_typ_2 401 424 IPR003591 -
Rops3g01465 822 SMART LRR_typ_2 282 306 IPR003591 -
Rops3g01465 822 SUPERFAMILY RNI-like 264 590 - -
Rops3g01465 822 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 695 811 - -
Rops3g01465 822 FunFam Leucine-rich receptor-like protein kinase family protein 203 301 - -
Rops3g01465 822 SUPERFAMILY L domain-like 44 307 - -
Rops3g01465 822 Pfam Protein kinase domain 684 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01465 822 SUPERFAMILY Protein kinase-like (PK-like) 651 812 IPR011009 -
Rops3g01465 822 ProSitePatterns Protein kinases ATP-binding region signature. 659 682 IPR017441 GO:0005524
Rops3g01465 822 Gene3D Ribonuclease Inhibitor 307 615 IPR032675 -
Rops3g01465 822 Gene3D Transferase(Phosphotransferase) domain 1 672 818 - -
Rops3g01465 822 ProSiteProfiles Protein kinase domain profile. 428 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01465 822 FunFam Receptor-like protein kinase HSL1 307 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01465 Rops-Chr3 21802418 21806380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01465 636 812 Receptor kinase-like Gene Family AT1G28440 57.062 1.30e-51 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops3g01465 Pkinase 1.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01465 - - ccaj:109805711 923.694