Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01460 ATGGAGGGTGGTTCTGAAGGTGAGAAGGAGAAGAAGCCACCGGAAGGGGAGAACAAGGTGAAGCGTAAAATGAAGACTGCTTCACAGTTGGAGGTTCTGGAGAAAACATATGCTGTGGAGGCCTACCCTTCGGAGGCATTGCGGGCTGAGCTGTGTGCAAAGTTGGGTCTGTCTGATCGTCAATTGCAGATGTGGTTCTGTCATCGGAGACTGAAGGACAGGAAGACTGTGTCAGCAACCAAGAAGTCCCGAAATGATTTGCCACCAGCTTTGGCTCCACTGGGGGAGGGTGTTGAGCAAATAGCAGTGGCTGATATTAGGCATGATCATGGTTTGGCTTCCGGGTTGAGGTCATTTGGTCATCTGGACTCATCACGAGTGGTGCCACGGCCTGGGATAATGGCCTTTCCTAGGATTGGAGTTGGATTGCTTGCAACGAAGAACAGCAGTTACTATGAACCTTATCAGAGTATAGAGGAACTGCGAGCTATTGCATTTGTGGAAAGACAGTCGGGGGAGTCATTAAGAGAGGACGGACCAATTCTGGGGATGGAATTTGATTCCTTGCCACCGGGTGCATTTGGTGCACCAATAGGGGCAGTGACAATGGGGCGACACAGGCAGTCTGGAAGGCCTTTTGAGGCAAAAATTTATGAACAGATGGACAAGGGTGTTTCAAGGACTCTCCATGAATATCAATTTATTCCAGAGCAGCCGACTGTTAGAAATGAGACATATGAGAGAGTTACCCCCTCTATCCACTATAGTTCTCTTGATGGCATTCCACATTCTAGGACTTCATTATCTAGTGGGCGATCTTTCCTTAATGGGAATGAATCTGCACCTTATGGATATGGAGTTCAAGGTCAGATACCTGGTCTAAATCTTTTGTCTCAGCAAGATAGGCAGCATCATCTTTTGCCTTCTGCTTCAGGAGGAAATGATGATGTTCGACGAGAGAACCCTATTGATGTAACTGTTGACACTCATAACGGGTCTCACCCAATAACCCTGATTGACAACCCTCTAGTGCCATCTGATAGGAGGGTTATCCATAAGGAGGAACTTTCAAGGTTTCAAAGGAAGCGAAAGAATGAAGAGGCTCGAATGCAGCGAGAACTTGAAGCACAAGAGAAAAGAATTAGAAAAGAGCTTGAGAAACAGAATATTCTAAGGCAAAAGAGAGAGGAACAAGTAAAGAAAGAGATGGAGAGGCATGACCTTGAAAGGCGGAAGGAAGAGGAAAGGTTAATGCGTGAAAGACAGCGAGAGGAGGAGAGGTACCAAAGAGAACAGAGGCGTGAACTGGAGCGGCGGGAGAAGTTTTTACTGAAGGAATCAATCAGAGCTGAGAAACTTAGACAGAAGGAAGAACTACGCAGGGAGAAAGAGGCAGCAAGGATCAAAGCTGCCAATGAGAGAGCTATTGCTCGTAGAATGGCAAAAGAATCGACAGAACTTATCGAAGATGAACGTCTGGAACTCATGGAGTTAGCTGCATCAAAGAAGGGGCTTTCTTCAATACTGGCTCTTGATCATGAAACTATGCAAAATCTTGAATTATATGGAGATGGGCAAACTTCCTTCCCACCCAAGTCTGTACAGTTGAAAAGAGCCTTTTCAGTTCAGCCTTGGTCAGATTCTGATGAGAATGTAGGAAATCTTCTGATGGTTTGGAGATTCTTGATTACCTTTGCTGATGTTCTTGGAATATGGCCATTTACCTTGGATGAACTTGTACAAGCTTTTCATGACTATGACCCTAGGTTGTTAGGTGAGATTCATATTGCTCTCCTGAGATCCATTGTAAAAGATATTCAAGATGTTGCAAGAACACCCTCTATTGGATTAGGAGCCAACCAAAACAGTGTTGCCAACTCTGGTGGGGGGCATCCACAGGTAGTTGAAGGGGCATATGTGTGGGGTTTTGATATAAGAAATTGGCAGCGACATTTAAATCCATTAACATGGCCAGAGATTTTGCGACAATTTGCTTTGTCAGCAGGATTTGGGCCTCAACTGAAGAAACAAAATATTGAGCAGGTGCATCCTTGCAATAATGATGAGGGTAATGATGGTAAAGATATAATTTCTAATCTGCGCAGTGGAGCAGCTGTTGAAAATGCTGTTGCTATTATGCAAGAAAAGGGATTAGCTAACCCAAGAAGATCTAGGCATCGCCTGACGCCTGGAACTGTTAAATATGCTGCATTTCATGTCCTTTCTCTTGAAGGAAGCAAAGGCCTCAATATCTTGGAAGTTGCAGACAAGATTCAGAAATCTGGACTTCGTGACCTTACAACAAGCAAAACACCAGAGGCTTCTACAGCTGCTGCTTTATCTAGGGATACAAAACTATTTGAAAGGACAGCTCCTTCAACATATTGTGTACGTCCTGCATATAGAAAGGACCCAGCGGATGCTGAAGTAATCTATTCAGCTGCCAGGGAAAGAATCAGGATATTCAGAAGTGGATCTGTGGATGCTGAAGAAGCTGATGATGGTGAAAGGGATGAAGATTCTGAAAATGATATGGCAGAAGATCCTGTGATTGATGATTTAGGAACTGAAAGAAATTCAAAAAAGGAGGGTTCCAATTCTGAGGTATTTAATGCAAACACTGTAATGAGAAGTAACAAGTGCAGTGGTGAGGTTTTGCAAACTCCTGATGCTTTCCATGAGAAAATGGATAAGGGTTTGGCTTCAATTGTTACTGCAGGCATCAACGAGCATAAAGATATTGATACCTCGAGTGAAATTGCTGTTTGCAGCAACGATGTGGCTATTCCTAATCTAGAAGGTGTGGATGTTGATGAAAGCATTCCAGCTGAGCCATGGGTACAAGGGCTTATGGAAGGAGAGTACTCGGATCTTAGTGTAGAGGAGCGTCTTCATGCTCTTGTTGCTTTGATTGGTGTGGCAATTGAAGGAAATTCGATTCGTGTTGTACTTGAGGAACGTCTAGAAGCAGCAAGTGCTCTAAAGAAGCAGATGTGGGCTGAAGCACAGCTTGATAAACGCCGTATCAAAGAGGATTATTTTGCTAAGATGCAGTCTGTCTCTTATTTGGGCAATAAAAATGAACCAGTTGTTGCATTTCCATCAGTAGAGGGTAAAGAGTGCTCATTGCTTACTGTTGACGTAAAAAATGATAAGGCTTTACTCACTCCCAGTGACCAGCATGAACAGATAAATGCACTTCAGGAAAATCAGAATCATCTTCAGAGTTCCCCATTAGACGTCAACATGCAGATGCAAGATTGTTCTGCTGGCCCAGATAATTATTTCCAACAATCAGTATATGCTACTGAAAAATCAAGGTCAAATTTAAAATCATACATTGGCTACTTGGCAGAGCAAACTTACATGTATAGGTCATTACCTCTTGGTTTGGATCGAAGACATAATCGATACTGGCAGTTCATTACATCTGCTTCTCAAAATGACCCAGGTTGTGGCAGGATTTTTGTGGAGTTACATGATGGTTGTTGGAAGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTATTGACATCTTTGGATGTACGTGGGATCAGGGAGTCCCACTTGCATATGATGTTGCAGAGAATTGAAATGTCCTTCAAGGAATCTGTTAGAAGGAATGTCCTAAACGGTAACCTGAGAATTAAAAATGGAGACACTGTCAAGAGACTCAAGACAGAAGCTGCTGAAATGGCTACAAACCAAGATTGCAGTGTTAATAGTAACTTTCCTGCTTCTGCATGCATTGATAGTTTGGATGCCTCAGAGACCTCAACGTCTTTTGTGGTCCAGCTTGGAAGAAATGGAGCTGATGACAAAGATGCTTTTACAAGATATTGGGACTTTGAGAAATGGATGCGAAAGGAATGCCTAAGTTCCTCAGTATTATGTGCAATGAAGTTTGGGAAGAAGAGGTGCAGCCAACTGCTGGCCATCTGTGATTTGTGCGATCATGTTTATTTCTTTGGAGGAATTTCATGTCCTTCATGTCATAGAATCTTCAGTAATTGTAAGAGCAACTCTAGTTCTTCTGAACATATTGCTCATTCTGAAGGCAAAGTGAAGATTGGCACTGATTTTCATGTATCATCCTCATCTCCTTTGAGGATGAGATTGCTCAAAATCCTCTTGTCGGTTGTTGAGGTAACCCTTCCTCAAGAAGCTCTGCAACCATTTTGGACGGAGAGGTACAGGAAATCATGGAGTACAAAGCTGGAAGCTTCCTCATCAACTGAAGACCTTCTGCAGATATTAACTGCATTGGAAGGTGCAATAAAGAGGGAGTATTTGGATTCAAACTATGAAACTACCCATGAGCTGTTGGGTTCCTTTAGTTCTTCTGGATGTCCCACTAACGATTCCATAGGTGCTGAAAGGATACCTGTACTTCCTTGGGTGCCATATACAACAGCTGCTGTGACTCTAAGGCTCATGGAACTTGATGCATGCATCTTTTACACTTCACAGCAGAAAGTGGAGTCCGAGAAGGATAAGAAAATTGGAATTGTTATGAAGCTTCCATCAAAATATGCTGCTGCAAAAAATTCTGTTGATGCTGGTGCCATTGAAACTTCACTTCAGGCTGAGCATGCAGTTGAGAACTGTGTTGATCTTGGTGCTGGCCTTTCAAGCTACAACAGAGGACAAAGGACTCGACAAGGCCATACCCATTCTCGTGGTGGGAGATCACAAGGAAAGGTTGTTAGTTCAAGATCCGATTCTAGAAAGAAAAGCACTACCTCTAACAGCAGGAAAATGAGAAAATTACTTGGATGGAAAGGGAGACCATGTGGCCGAGTAGGACATGTTCGTGGTCGTCGGAGCATTAGAAGCAGGCAGAAACCAGCAGCCAAGGTGGATGTGATCAGTGTTAAGAGGGATACCCCAAAAGATATCATGGATGAAACACCTGATATCTTTGTCAGAGAGGAGATTAGTGAAGGTGAAATGGAAGCCACTGCTCTAAATGCTAGTAGTTCAGAGAGATTAGGCTATCAAAATGATATTTATCAACCAACAGGTGATGAGTATGATTGTCTGGTGGATAATAATGATGGATATCAGGGTGGATTTATTGGGAAATCTGATAACTTCATAGAACAAAGCCACTATGATGTGGATGATGAGGAAGATGTGGATATTGATGACAATGTCGATGTCGATGTCGATGATGAAGATGGGCAAGTCGATCCTGATGTTGAAGATTATATAATTGGAGGGGACTCAGATCCAGGGGACAACAAAGAAGACAATGCGGAACAAATCAAGGATCCGGTCGGAGCGGGTTCTACATCATCAAACTACAGTGATTAG 5316 0.431 MEGGSEGEKEKKPPEGENKVKRKMKTASQLEVLEKTYAVEAYPSEALRAELCAKLGLSDRQLQMWFCHRRLKDRKTVSATKKSRNDLPPALAPLGEGVEQIAVADIRHDHGLASGLRSFGHLDSSRVVPRPGIMAFPRIGVGLLATKNSSYYEPYQSIEELRAIAFVERQSGESLREDGPILGMEFDSLPPGAFGAPIGAVTMGRHRQSGRPFEAKIYEQMDKGVSRTLHEYQFIPEQPTVRNETYERVTPSIHYSSLDGIPHSRTSLSSGRSFLNGNESAPYGYGVQGQIPGLNLLSQQDRQHHLLPSASGGNDDVRRENPIDVTVDTHNGSHPITLIDNPLVPSDRRVIHKEELSRFQRKRKNEEARMQRELEAQEKRIRKELEKQNILRQKREEQVKKEMERHDLERRKEEERLMRERQREEERYQREQRRELERREKFLLKESIRAEKLRQKEELRREKEAARIKAANERAIARRMAKESTELIEDERLELMELAASKKGLSSILALDHETMQNLELYGDGQTSFPPKSVQLKRAFSVQPWSDSDENVGNLLMVWRFLITFADVLGIWPFTLDELVQAFHDYDPRLLGEIHIALLRSIVKDIQDVARTPSIGLGANQNSVANSGGGHPQVVEGAYVWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQLKKQNIEQVHPCNNDEGNDGKDIISNLRSGAAVENAVAIMQEKGLANPRRSRHRLTPGTVKYAAFHVLSLEGSKGLNILEVADKIQKSGLRDLTTSKTPEASTAAALSRDTKLFERTAPSTYCVRPAYRKDPADAEVIYSAARERIRIFRSGSVDAEEADDGERDEDSENDMAEDPVIDDLGTERNSKKEGSNSEVFNANTVMRSNKCSGEVLQTPDAFHEKMDKGLASIVTAGINEHKDIDTSSEIAVCSNDVAIPNLEGVDVDESIPAEPWVQGLMEGEYSDLSVEERLHALVALIGVAIEGNSIRVVLEERLEAASALKKQMWAEAQLDKRRIKEDYFAKMQSVSYLGNKNEPVVAFPSVEGKECSLLTVDVKNDKALLTPSDQHEQINALQENQNHLQSSPLDVNMQMQDCSAGPDNYFQQSVYATEKSRSNLKSYIGYLAEQTYMYRSLPLGLDRRHNRYWQFITSASQNDPGCGRIFVELHDGCWKLIDSEEGFDALLTSLDVRGIRESHLHMMLQRIEMSFKESVRRNVLNGNLRIKNGDTVKRLKTEAAEMATNQDCSVNSNFPASACIDSLDASETSTSFVVQLGRNGADDKDAFTRYWDFEKWMRKECLSSSVLCAMKFGKKRCSQLLAICDLCDHVYFFGGISCPSCHRIFSNCKSNSSSSEHIAHSEGKVKIGTDFHVSSSSPLRMRLLKILLSVVEVTLPQEALQPFWTERYRKSWSTKLEASSSTEDLLQILTALEGAIKREYLDSNYETTHELLGSFSSSGCPTNDSIGAERIPVLPWVPYTTAAVTLRLMELDACIFYTSQQKVESEKDKKIGIVMKLPSKYAAAKNSVDAGAIETSLQAEHAVENCVDLGAGLSSYNRGQRTRQGHTHSRGGRSQGKVVSSRSDSRKKSTTSNSRKMRKLLGWKGRPCGRVGHVRGRRSIRSRQKPAAKVDVISVKRDTPKDIMDETPDIFVREEISEGEMEATALNASSSERLGYQNDIYQPTGDEYDCLVDNNDGYQGGFIGKSDNFIEQSHYDVDDEEDVDIDDNVDVDVDDEDGQVDPDVEDYIIGGDSDPGDNKEDNAEQIKDPVGAGSTSSNYSD* 1772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01460 1771 Coils Coil 445 476 - -
Rops3g01460 1771 ProSiteProfiles DDT domain profile. 549 608 IPR018501 -
Rops3g01460 1771 ProSiteProfiles HARE-type HTH domain profile. 731 800 IPR007759 GO:0006355
Rops3g01460 1771 MobiDBLite consensus disorder prediction 826 870 - -
Rops3g01460 1771 Coils Coil 349 439 - -
Rops3g01460 1771 MobiDBLite consensus disorder prediction 1742 1756 - -
Rops3g01460 1771 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Rops3g01460 1771 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1125 1197 IPR028941 -
Rops3g01460 1771 SMART HOX_1 18 80 IPR001356 GO:0003677
Rops3g01460 1771 MobiDBLite consensus disorder prediction 1706 1740 - -
Rops3g01460 1771 Pfam HB1, ASXL, restriction endonuclease HTH domain 731 798 IPR007759 GO:0006355
Rops3g01460 1771 SMART testlast3 549 608 IPR018501 -
Rops3g01460 1771 Pfam DDT domain 550 605 IPR018501 -
Rops3g01460 1771 Gene3D - 10 88 - -
Rops3g01460 1771 MobiDBLite consensus disorder prediction 1 26 - -
Rops3g01460 1771 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 1771 IPR044977 GO:0006357
Rops3g01460 1771 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 944 985 IPR028942 -
Rops3g01460 1771 SUPERFAMILY Homeodomain-like 15 75 IPR009057 -
Rops3g01460 1771 MobiDBLite consensus disorder prediction 831 850 - -
Rops3g01460 1771 CDD homeodomain 19 76 IPR001356 GO:0003677
Rops3g01460 1771 MobiDBLite consensus disorder prediction 1546 1588 - -
Rops3g01460 1771 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Rops3g01460 1771 MobiDBLite consensus disorder prediction 1706 1771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01460 Rops-Chr3 21718244 21737295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01460 1 1515 Homeobox Transcription Factor Family AT5G44180 51.764 0.0 1398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Rops3g01460 WSD 8.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01460 - - gmx:100797480 2470.66