Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01459 ATGGGTGTGGACTATTACAAGATCTTGCAGGTTGATAAGAATGCCAAAGATGAAGACCTGAAGAAGGCTTATAGAAAACTTGCCATGAAATGGCACCCTGATAAGAACCCAAACAACAAAAAAGAAGCAGAAGCTAAGTTTAAGCAAGTTTCTGAAGCCTATGAGGTGCTTAGTGATCCTCAAAAGCGAGCTGTCTATGATCAATATGGGGAAGAGGGTCTGAAGGGTCAGGTTCCTCCTCCTGATGCTGGTGGTGGTGGAACTACTTTCTTTTCCACAGGAGACATCCCAGGGGGGGCGTTTCGGTTCAATCCCAGGAGTGCTGATGACATTTTTGCAGAGGTTTTTGGGTTCTCAAGCCCATATGGTGGTATGGGTGGGAGAGGTGGTGGTGGCATGAGATCTAGGTTTTCTGGTGGGATGTTTGGTGATGAAATGTTTGGATCTTTCGGAGAAGGAGGAGGGATACATATGAATCAAGGAGCACCTCGCAAAGCTCCTCCTATTGAGAATAGGTTGACCTGTACTCTCGAGGAGATATATAGAGGGACTACAAAGAAGATGAAGATCTCTAGAGAAATTGCAGATGCCAATGGCAAAACCATGTCAGTGGAGGAGATCTTGACCATTAATGTCAAGCCTGGTTGGAAGAAGGGGACAAAGATCACCTTCCCAGAGAAGGGTAATCAACAGCCAAACGTAATTCCTGCAGACCTTGTTTTTGTCATTGATGAAAAACCACATGGAGTTTTCACCCGCGATGGAAATGATCTGATTGTGACACAGAAGATTTCTCTTGTGGAAGCTTTAACTGGTTATACAGTGCACCTCACTACCCTAGATGGTAGAAACTTAAGTATACCAATCAACAGTGTTATCCATCCCAACTATGAGGAGGTTGTCCCAAAAGAAGGAATGCCACTCCCCAAGGATCCATCAAAGAAAGGGAACTTGAGGATAAAGTTCAACATCAAGTTCCCAGCTCGGCTCACTGATGAACAAAAATCAGGAATCAGGAAACTCTTGGCTGGCTCAGCCTGA 1041 0.4486 MGVDYYKILQVDKNAKDEDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQVSEAYEVLSDPQKRAVYDQYGEEGLKGQVPPPDAGGGGTTFFSTGDIPGGAFRFNPRSADDIFAEVFGFSSPYGGMGGRGGGGMRSRFSGGMFGDEMFGSFGEGGGIHMNQGAPRKAPPIENRLTCTLEEIYRGTTKKMKISREIADANGKTMSVEEILTINVKPGWKKGTKITFPEKGNQQPNVIPADLVFVIDEKPHGVFTRDGNDLIVTQKISLVEALTGYTVHLTTLDGRNLSIPINSVIHPNYEEVVPKEGMPLPKDPSKKGNLRIKFNIKFPARLTDEQKSGIRKLLAGSA* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01459 346 PRINTS DnaJ domain signature 62 81 IPR001623 -
Rops3g01459 346 PRINTS DnaJ domain signature 6 24 IPR001623 -
Rops3g01459 346 PRINTS DnaJ domain signature 24 39 IPR001623 -
Rops3g01459 346 PRINTS DnaJ domain signature 42 62 IPR001623 -
Rops3g01459 346 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Rops3g01459 346 Gene3D - 166 247 - -
Rops3g01459 346 CDD DnaJ_C 167 330 - -
Rops3g01459 346 FunFam DnaJ subfamily B member 13 3 126 - -
Rops3g01459 346 CDD DnaJ 4 59 IPR001623 -
Rops3g01459 346 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Rops3g01459 346 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 342 - -
Rops3g01459 346 SMART dnaj_3 3 62 IPR001623 -
Rops3g01459 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 259 IPR008971 GO:0006457|GO:0051082
Rops3g01459 346 Pfam DnaJ domain 4 67 IPR001623 -
Rops3g01459 346 FunFam Dnaj homolog subfamily b member 165 246 - -
Rops3g01459 346 Gene3D - 248 327 - -
Rops3g01459 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 250 336 IPR008971 GO:0006457|GO:0051082
Rops3g01459 346 FunFam DnaJ subfamily B member 13 248 328 - -
Rops3g01459 346 Pfam DnaJ C terminal domain 169 327 IPR002939 -
Rops3g01459 346 Gene3D DnaJ domain 3 128 IPR036869 -
Rops3g01459 346 SUPERFAMILY Chaperone J-domain 3 99 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01459 Rops-Chr3 21714192 21717680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01459 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 1.28e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01459 K09510 - gmx:100778672 586.645