Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01458 ATGCTTGCGGTGTCACCTTTACCTTTGAGGAACACCAAAGATGAAAACCAAGAAGAGATGGAGAGCTTTTCAATTGAAAACTCACCAACCGGTGGTGATGGTGAACTTTCCGATGGGAATTTATTGGAAAGCATCAACTTTGATGACCTTTTTGTTGGCATCAATGTCGACGGTGATGTCTTGCCGGATTTGGAGATCGACCCAGAAATGTTTGCCGAGTTTTCTGTCAGTGGTGGTGAGGAATCGGAGATAAACTCATCGGCTTCGGTGGAAAACAATTGCAAAGTTGATGAAGACAAGAAGTTGAAGAAACAAGATGAAGACAAAACAACAACAACTTCAAGCCCAGGAGGGGAGGAGATAGTGAGCAAAAGGGATGAATCTATGGCGGTGAATAATCCATCTACAAAGGATGGTGGAAAAGGAAGAAAATTATCAACTCGAGCAAAGAATAATAATAATCCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACACCAGAATTGCACAGACGATTCGTGCAAGCTGTGGAACAACTAGGAGTGGATAAGGCAGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGTCATAACATTGCAAGCCACCTTCAAAAATATAGATCCCATAGGAAACATTTGCTAGCACGTGAAGCTGAAGCGGCAACCTGGAATCAAAGGAAACAAATGTATGGTGTTGCAGGCACAGGTGGAGGAGGGAAGAGAGAGGTGAGTCCTTGGTTAGCACCCACCATGGGTTTCCCTCCCATGACCCCAATGCACCATTTTAGACCCTTACATGTATGGGGGCATCCCTCAATGGACCAATCTTTCATGCACATGTGGCCTAAACATCTACAACATTCGGCGGCGCCACCGCCACCACCACCGCTCTCATGGGCACCACCAGCCGCACCCCAAGACCCTTCATTTTGGCATGCTCAGCATCCACGGACTCCCGCACTAATCCCAGGAACCCCTTGTTTTTCACAACCTCTGACAACACCGAGATTTGGGTGTCCACCTGTCCCGGGCATTCCACCACCGCATGCCATGTACAAAGCAGATCACGGCATTGGTGTCACTGGTCCTGCACCCTTCTTCGACTTCCATCCGTCAAAAGAGAGCATAGATGCAGCTATTGGAGATGTTTTATCAAAACCATGGCTGCCACTGCCACTTGGACTTAAGGCTCCAGCACTTGATAGTGTACTGAGTGAATTACAAAGACAAGGAATTTCAAACATTCCACCCTCTTGTGCTTGA 1278 0.4687 MLAVSPLPLRNTKDENQEEMESFSIENSPTGGDGELSDGNLLESINFDDLFVGINVDGDVLPDLEIDPEMFAEFSVSGGEESEINSSASVENNCKVDEDKKLKKQDEDKTTTTSSPGGEEIVSKRDESMAVNNPSTKDGGKGRKLSTRAKNNNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAATWNQRKQMYGVAGTGGGGKREVSPWLAPTMGFPPMTPMHHFRPLHVWGHPSMDQSFMHMWPKHLQHSAAPPPPPPLSWAPPAAPQDPSFWHAQHPRTPALIPGTPCFSQPLTTPRFGCPPVPGIPPPHAMYKADHGIGVTGPAPFFDFHPSKESIDAAIGDVLSKPWLPLPLGLKAPALDSVLSELQRQGISNIPPSCA* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01458 425 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 424 IPR044825 GO:0003700|GO:0045893
Rops3g01458 425 MobiDBLite consensus disorder prediction 292 308 - -
Rops3g01458 425 MobiDBLite consensus disorder prediction 290 321 - -
Rops3g01458 425 NCBIfam myb-like DNA-binding domain, SHAQKYF class 160 214 IPR006447 GO:0003677
Rops3g01458 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 216 IPR017930 -
Rops3g01458 425 Pfam Myb-like DNA-binding domain 163 212 IPR001005 -
Rops3g01458 425 MobiDBLite consensus disorder prediction 75 162 - -
Rops3g01458 425 SUPERFAMILY Homeodomain-like 158 217 IPR009057 -
Rops3g01458 425 Gene3D - 157 218 - -
Rops3g01458 425 FunFam Two-component response regulator 156 219 - -
Rops3g01458 425 MobiDBLite consensus disorder prediction 93 110 - -
Rops3g01458 425 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01458 Rops-Chr3 21642359 21646693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01458 1 289 G2-like Transcription Factor Family AT5G44190 45.695 7.09e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops3g01458 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01458 - - aprc:113858121 565.074