Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01448 ATGGTTGTGAAGGCGAAGAACATGGGTGTGATGAAAAACAAGAAACCTTGCAACAATGCAAGTGAGATTCATTACAGGGGTGTGAGGAAGAGACCTTGGGGTCGTTACGCCGCTGAGATAAGAGATCCCGGCAAGAAAAGCCGCGTTTGGCTTGGAACCTTTGACACCGCCGAGGATGCCGCAAAAGCCTATGACGCCGCCGCACGACAGTTTCGTGGTCCTAAAGCCAAAACCAACTTCCCTTTTACCTCAGACACCAAAGAAAACAACGTTAACCATGCTAACAACGTTAACAACAACCAAAGTCCAAGTCAGAGCAGCACCGTTGAGTCATCCACACCGGAGCGTGAGGTCACGCGCCGGCTAGACGTCGCCCCAGGTGGCGTCATGGATCGGTTCCCGTTTCTCCCTATGCAGCCGCAAATCATGGCGCTCGCCGGCGGTGCTGGTGGAGTAACTCTCGGACGACCGGTTTTCTTTCCTGAGTTTCTGAACCAGTTTCCGGTCCGGTTCGAACCGGGACCGGTGGAGTTTAACACCGGTTTTAACAGTGGGGTCCAGAGTGATTCGGATTCGTCCTCGGTCGTTGATTTTCAGCCAAAACCAGCTCTGAATCTTGATCTTAACTTAGCTCCACCCATGGATGCTTAA 651 0.5238 MVVKAKNMGVMKNKKPCNNASEIHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEDAAKAYDAAARQFRGPKAKTNFPFTSDTKENNVNHANNVNNNQSPSQSSTVESSTPEREVTRRLDVAPGGVMDRFPFLPMQPQIMALAGGAGGVTLGRPVFFPEFLNQFPVRFEPGPVEFNTGFNSGVQSDSDSSSVVDFQPKPALNLDLNLAPPMDA* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01448 216 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Rops3g01448 216 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Rops3g01448 216 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Rops3g01448 216 MobiDBLite consensus disorder prediction 77 113 - -
Rops3g01448 216 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Rops3g01448 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 147 - -
Rops3g01448 216 MobiDBLite consensus disorder prediction 75 124 - -
Rops3g01448 216 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Rops3g01448 216 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Rops3g01448 216 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Rops3g01448 216 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Rops3g01448 216 FunFam Ethylene-responsive transcription factor 2 24 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01448 Rops-Chr3 21558543 21559517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01448 22 214 AP2-EREBP Transcription Factor Family AT5G44210 44.059 4.84e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops3g01448 AP2 6.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01448 K09286 - gmx:100801924 209.92