Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01442 ATGAGTAGTGTTTGTGCAGAGCAACACAAGTTTTTTCACCCTTCTCACCACCTTCTCTCTCTTAAGAAATCTCTTAGGGACGTTGACATCCCACCAAGGAAGCTTCTCACCCGCCGTGCCACCGCCGTACACGACGGTACCGGAGACATGTTTTCCGATGAGACCCTTTTTCAAAAGTACCTTCCCCACAACAACCCTTTAGATTCCTCTGATGACAGTGACCCTTATTCTTCTGATCATTTCAGAATGTTTGAATTCAAGGTCCGGCGATGCACCCGAAGCCGCAGCCATGATTGGACAGACTGCCCTTTTGCTCATCCCGGCGAAAAGGCTCGCCGCCGTGACCCCCGGCGGTTTCATTACTCCGGCACGGTTTGTCCGGATTACCGCCGGGGAAGTTGCAGCCGTGGTGATGCATGTGAATTCTCACATGGTGTTTTTGAGTGTTGGTTGCACCCTTCTAGGTATAGAACTGAAGCTTGCAAAGATGGCAAGAATTGCAAGAGAAAAGTTTGCTTCTTTGCTCACACACCTCGTGAACTAAGGGTTTTGCCACCTGATGTTTCTTCATGCAATGGAAATATCAACTGCAATTACAGTACTATTATTAACAATAAGAGCAAGTTGTTGAAGTGTTGTTATTGTCATTGTTCTTCTTCTACTTGTTCACCAACTTCTACTTTGTTTAATATGTCCCATTTTTCTTCTTCTTCTTCTTCTCCACCTATGTCACCCTCTTCTTCACCTTCTTCTCTCTCTCCCACTCTTTCAAGGTTTGTGGAGACATCATGTGGTGGGGTTAACCATTATCATGATGGTGTTGTGAGGTGCAAGGATATGCTTAATGATGTTATGTGTTCCTTGGAGGGTTTGAATTTTGGTGAGGCTTCATCTTTTTCTGCTTCCAAATCACAAAATCTTCCTTGGCTTGATGTTTCTCTTAACTGTGAGGACTTGAAACATTCAATTCTTTCTCCTTCTGATGCTTCTTTTGGTTGTGAAGATCATCATAATCATCCTCAGAAGCAGTTCATTCTTTCTCCAACCATTGATTCAGCAAGCTTTTCCAATGGGAAATTGTTGAAGGAAGAGAACAAGGTTGTTGATGATGTCACATCTGCCCCAGATCTCGGTTGGGTCAATGACTTGCTGATGTAG 1158 0.4413 MSSVCAEQHKFFHPSHHLLSLKKSLRDVDIPPRKLLTRRATAVHDGTGDMFSDETLFQKYLPHNNPLDSSDDSDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPDYRRGSCSRGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRELRVLPPDVSSCNGNINCNYSTIINNKSKLLKCCYCHCSSSTCSPTSTLFNMSHFSSSSSSPPMSPSSSPSSLSPTLSRFVETSCGGVNHYHDGVVRCKDMLNDVMCSLEGLNFGEASSFSASKSQNLPWLDVSLNCEDLKHSILSPSDASFGCEDHHNHPQKQFILSPTIDSASFSNGKLLKEENKVVDDVTSAPDLGWVNDLLM* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01442 385 PANTHER UNKEMPT FAMILY MEMBER 37 384 IPR045234 -
Rops3g01442 385 SUPERFAMILY CCCH zinc finger 119 149 IPR036855 GO:0046872
Rops3g01442 385 Gene3D - 120 184 - -
Rops3g01442 385 FunFam Zinc finger CCCH domain-containing protein 66 78 146 - -
Rops3g01442 385 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Rops3g01442 385 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Rops3g01442 385 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Rops3g01442 385 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 145 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01442 Rops-Chr3 21508964 21510161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01442 76 190 C2H2 Transcription Factor Family AT5G12850 66.087 9.67e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops3g01442 zf-CCCH 9.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01442 K23047 - lang:109363454 406.371