Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01439 ATGCCTGCTCAGAAGCGTTCCTTCTCCGACTCTCTCCAAGATCATCACCGCCATCATGTCAAGCAATCCATCGAGGAACAACAACAACATGAAGAAGAAGAAGAAGAAGATGATGATAAATCAGATGGTTCTGACCATACCCCATATTATCCCTCTGAAGAAAAACCCGAATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATCATTAAGAAAACTCGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTAACAAGTCCATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGACCCAAACTACGATGCCTTAATTGCAGCTTTATACCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGCGTTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAAGCTTCAATCGCAAAAGTTGTTCAACGGCAATCTGAAGCACTAGTTAAGAGACGTAGAGATACACCAGGTGCATTTGTGACAAGATCACGCCGCAATCAACGAAATGTTCTTTCTAGGAGACAAAACCAAGGGATTGATACTCAAGGATCTGAAGATAATGAGGAGGAAAATGACAACAATGAAAAGGACTCATCATCCACCGACGAGCAATGTACAGAACTCAGGCAGCGAAGGTGGAAGAGGCGGACCAGAGTTCGCCCTTCTCAGCCCTCATCATCAGCAAGTCCTGATGGTGGTGAAAGTGATAAAGATATAAGTAGAGAAAATCGAGGAATTTCTTCAAGGCAGGTGTCAAAACCTGAAAAGCTTACATGGGGAAGGGGTGGTGTTAGGAGTCACACGCGGCATGGCAGTGGTAATGGTAGCAATAGCAAAAGTTCCCGCAGTAGTCGCTTGGCTAAATTGGTTGATCATCTCCGTAGCTTGAATGAAAACACTGATGAGTTTGATATCCATCTTATGCTTTTTTCTTTGGACAAACAAAGTACACCAAGTTTGCAGCAGCCACACCTTTGCTGCCAGCCAGCATTGTCTGTGAAGCACCTTTGTGAATATGTTGCTCTTCAGACACCTTTGCAAGTTGAAGAAGTTGAGATTTTGGCAGTTAAAGGGATCTGCGGTACATTATGTGACAAGTCATTTGATGAGACTTCATCATATGATGATCTAACAACACTGGTCATAGATCCTAGCAAAGATGAACTGGAAACCTTGGAAGGGCATGAAACTTTGGCAGGGCTTAAATCCAGATGCATATCTAAAAGGGAACATTTGATTCTTGCATACAGGCGGAAGGAGTGA 1341 0.4355 MPAQKRSFSDSLQDHHRHHVKQSIEEQQQHEEEEEEDDDKSDGSDHTPYYPSEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECINKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELAFREEDKNRNKLIQASIAKVVQRQSEALVKRRRDTPGAFVTRSRRNQRNVLSRRQNQGIDTQGSEDNEEENDNNEKDSSSTDEQCTELRQRRWKRRTRVRPSQPSSSASPDGGESDKDISRENRGISSRQVSKPEKLTWGRGGVRSHTRHGSGNGSNSKSSRSSRLAKLVDHLRSLNENTDEFDIHLMLFSLDKQSTPSLQQPHLCCQPALSVKHLCEYVALQTPLQVEEVEILAVKGICGTLCDKSFDETSSYDDLTTLVIDPSKDELETLEGHETLAGLKSRCISKREHLILAYRRKE* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01439 446 MobiDBLite consensus disorder prediction 9 28 - -
Rops3g01439 446 MobiDBLite consensus disorder prediction 1 52 - -
Rops3g01439 446 PANTHER OS11G0578200 PROTEIN 13 445 IPR044592 -
Rops3g01439 446 SMART ring_2 72 111 IPR001841 -
Rops3g01439 446 CDD RING-HC_RING1-like 69 134 - -
Rops3g01439 446 MobiDBLite consensus disorder prediction 186 208 - -
Rops3g01439 446 MobiDBLite consensus disorder prediction 295 310 - -
Rops3g01439 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 142 IPR013083 -
Rops3g01439 446 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Rops3g01439 446 Pfam Zinc finger, C3HC4 type (RING finger) 71 111 - -
Rops3g01439 446 SUPERFAMILY RING/U-box 59 143 - -
Rops3g01439 446 MobiDBLite consensus disorder prediction 171 185 - -
Rops3g01439 446 MobiDBLite consensus disorder prediction 170 311 - -
Rops3g01439 446 ProSiteProfiles Zinc finger RING-type profile. 72 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01439 Rops-Chr3 21468902 21475134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01439 65 135 C3H Transcription Factor Family AT3G23060 36.486 1.28e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01439 K10695 - gmx:100819311 658.677