Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01435 ATGGGGTGTTTGGGGTTTGATATGGTTGAGGTTAATGCTCAAAGGTTGGAGCTTTGGTGGTTTAAGAGGAGGGGATTGGGAATTTTGTTGAGGATTGCATTTGGGTGGTGGTTGTTTCTGTTGTTTGTTAATCCAGTGGTAGGTTTGAGACCCTTAAGGGACAGAACTACCTCGTGGGGTGATGAGTGGATTTTTACAGGAAAAGAGGAAAGTGACTTAGGTCCATTTTCACAATGGAACATAACCGGAACTTACAGAGGGACTTGGAAGTTTTTAGATACCACAAATGGCTCTTACAGATTTCCAGACATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTTAGTACACCCACAAAGATAACTGGTGTACATTATGTGCAGGGGGTAGTTATATTCCATGATGTGTTTGACCACGAATACAATGTTGGTGGTGCTCAAATCAGAGTTGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGCGGAAAAGAGGGAGGGTTGAATCCAGATGGAGATTATATTTTATCCAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAATCTTCACGACATAAGATGAGGAGAAGAAAGCATTCCCCATTGCATGGCATGGAGAAACATTGTAATGTGGAAATTGCAGCACAGGTGTCACGCTTGTCATCATCAAAACATGAAGGGGAGCATGATTCTTTTCAGCTAGAAGGGTTAATGGAAAGTCCATCCACGGATGATGACGGGGATTGCTTCTCACCTTTGCAGTTAAATGCAACATCTATTAACATTGATGTCTACTACAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTTTCCTTCTTGCAAGTTCTTCTATTGATTCGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTTTCAATAATAATGATTGGTCAGCAAGCTATAGTGGATGCTTATCTTTGCCTTATACATCTGACTGCAGGAATACTAGTCGAATCCTTGTTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAGTAGGCCTTTGAGTAGTGGTGAAGGTTGGGAGACAATGAGGCGTGAACTTTCAGTTTTATACAGCCGTTTCTATGGGATCCTGTTGGGAGGCATTCTGCTCATGTATGAATTTCATAATTATATGAGGCCTATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAACGTTGTTCGAGATTCACGCAAACCATTGCATCCTCATTATATATTAGGCATAACTGTTACTCGGGTAGCAATTCCATTATATATTTTTGGGTGTCCTAACAACTTCTTGCGCATAGAACCGGATCAGAGCTGGTGTGCTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTTCTTCAGCACTATCTTGGGTCCCGGTGGTTCATTCCTCACCAGATTCTTCCCGAGAAATACAGTTATTATAGGAGGTTTGCTCAAGATACAAATCATGCCACAGACTGTGTAATTTGCATGACAGCCATTGATCTTTCGCCACGATCTAATGATTGCATGGTTACACCTTGTGATCATTTTTTCCACTCTGGCTGTTTGCAAAGATGGATGGACATAAAAATGGAGTGCCCAACTTGCCGGCGCCCACTTCCACCCGCATGA 1737 0.4128 MGCLGFDMVEVNAQRLELWWFKRRGLGILLRIAFGWWLFLLFVNPVVGLRPLRDRTTSWGDEWIFTGKEESDLGPFSQWNITGTYRGTWKFLDTTNGSYRFPDIRKINGNSVIELVSTPTKITGVHYVQGVVIFHDVFDHEYNVGGAQIRVEGVYIWPFRQLRMVANSGKEGGLNPDGDYILSNPYHLLGVFSSQVFQESSRHKMRRRKHSPLHGMEKHCNVEIAAQVSRLSSSKHEGEHDSFQLEGLMESPSTDDDGDCFSPLQLNATSINIDVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIIMIGQQAIVDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSSGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYMRPILLLVYSFWIPQIITNVVRDSRKPLHPHYILGITVTRVAIPLYIFGCPNNFLRIEPDQSWCACLAVFIGLQAAILLLQHYLGSRWFIPHQILPEKYSYYRRFAQDTNHATDCVICMTAIDLSPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01435 578 FunFam E3 ubiquitin-protein ligase, putative 514 578 - -
Rops3g01435 578 Pfam Ring finger domain 527 572 IPR001841 -
Rops3g01435 578 PANTHER RING ZINC FINGER PROTEIN 135 577 - -
Rops3g01435 578 ProSiteProfiles Zinc finger RING-type profile. 528 572 IPR001841 -
Rops3g01435 578 SMART ring_2 528 571 IPR001841 -
Rops3g01435 578 SMART ringv_2 527 572 IPR011016 GO:0008270
Rops3g01435 578 SUPERFAMILY RING/U-box 513 577 - -
Rops3g01435 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 578 IPR013083 -
Rops3g01435 578 CDD RING-H2_TUL1-like 522 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01435 Rops-Chr3 21417932 21430721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01435 528 575 C3H Transcription Factor Family AT4G12190 39.583 6.39e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01435 K23788 - gmx:100802452 1065.45