Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01433 ATGTCGTTGCAGGCTCTGAAGGAAACTCTAAGGCCTTGCACAACACAACAACCACCTTCTTTATCTTCATCTTCTTCCATTACCCAAACACAACCCAATTCGATTCTCCAAGCTTGTGATTCCCACTTCTTAAGAAAACCCCCAAAATCTTCTCTTTCCAACCAGCTTCGCCGTCTTCAGGATTCCGCACTTCAGCCCCACAATTCCCTTGAGCCATACTCATACTCCAAAACCCAACAACAAGAAAAACAAGAAGAAGAAGAAACGAAGGTGAAGAGGGTGAAATTCGGTACAGAAAAATCGTCCCAGTTTCAATTTGATCACACTGGACCCTTTGAGCCTTTGGTCTTGTCTTCACAAGGAGAAGTTCCCGTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTACTTGAGCATCAAAGAGTGGGAGTGAAGTTTCTCTATGGCTTGTACAAGAACAATCATGGAGGCATCCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAAACAATAGCTTTTCTTGCTGCCGTCTTTGGTAAAGAAGGAGAGTCCATTCTAAGTGAAAACCGGGTAGAGAAAAGAGACCCAGTATTAATAATTTGCCCAACATCCGTTATTCACAACTGGGAGAATGAATTCTCTAAGTGGTCTAACTTCAATATTTCCATTTATCATGGTGCAAACCGGGATCTAATACATGATAAATTGGAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACTTACAGGATTCGTGGCAGTTCCTTGTCAGATATCAACTGGAGCATTATGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGCTATGGTCTTACTGGGACCATAATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGATTGGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTTCGTGAGTTCTATGATGAACCCCTTAAGCATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTAGCAGTTCTTCATAAATACATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTTTGTGCAATGAGTGATTTGCAAAAACGTGTTTACACGAGAATGTTACAGCTTCCTGACATTCAATGCCTCATTAATAAGGACCTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAGGTTGAATGTTGTAAAAGGATGGTACCAGATGGAGTTATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGTCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCTGAGTTTGCAGCTGCTGTCTTCGGCCTTGATATTGATTTAGTGGGTGGGAACACGCAGAATGAGAGTTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAAAAACTATTGTTTTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCGACTAATTTACGTCAATCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGCGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGATAGGTCCTTTCGCTTTGGACAGAAGCGACATGTCATGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAGGAAATAGTTTATTCTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCAGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAGCTTTTTGGAATTTGTAATTTATTTCGAGATTTATCTGATAAGCTATTTACCAGTGAGATCATTGAATTGCACGAGGTGAGTAAAGAACATGGCCATAAAACAGAACATCAGGAAAAAATAAATCTGACAGAAGAAACAGGTTCATTAGCATCAGTGTCTGAAGCCAGGTTATGTACCGAATCTGCAAAGGCTGCAACAAGTAAACAAGATCTTGAATTTGAAGACCTTGGTATTGTCTATGCTCATCGCAATGAAGACATAGTAAACTTCGGACCAGGGATTCAAGGGAAAATATATACCAGCAACCCTTCAAATGATAGCCTAAGCAAGCCAAGCATCTCTTTAGTCCATCAAAGAAAGAAACCAGATTGTGCACCTAAAGAACAGAAAGTTCCTTTGATTGATGAAAGGAAGAGAACCCAATATGGTCTACTTGCAGAGTCTATGGGCATGGGAGAGCTTGCATTTAGCAAATGGCTACTATCAGCAACTCCACTGGAGAGAGAGAAAGTGCTTATAGACTACAAGAAGAAAAAGAAAATGCCTAATGGTTGA 2634 0.4138 MSLQALKETLRPCTTQQPPSLSSSSSITQTQPNSILQACDSHFLRKPPKSSLSNQLRRLQDSALQPHNSLEPYSYSKTQQQEKQEEEETKVKRVKFGTEKSSQFQFDHTGPFEPLVLSSQGEVPVVQVPASINCRLLEHQRVGVKFLYGLYKNNHGGILGDDMGLGKTIQTIAFLAAVFGKEGESILSENRVEKRDPVLIICPTSVIHNWENEFSKWSNFNISIYHGANRDLIHDKLEANGVEILITSFDTYRIRGSSLSDINWSIMIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYTRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRMVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGLDIDLVGGNTQNESFMGLSDVKHCGKMRALEKLLFSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVMVFRLLAAGSLEEIVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIELHEVSKEHGHKTEHQEKINLTEETGSLASVSEARLCTESAKAATSKQDLEFEDLGIVYAHRNEDIVNFGPGIQGKIYTSNPSNDSLSKPSISLVHQRKKPDCAPKEQKVPLIDERKRTQYGLLAESMGMGELAFSKWLLSATPLEREKVLIDYKKKKKMPNG* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01433 877 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 319 IPR014001 -
Rops3g01433 877 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 528 681 IPR001650 -
Rops3g01433 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 369 IPR027417 -
Rops3g01433 877 SMART helicmild6 554 637 IPR001650 -
Rops3g01433 877 Pfam SNF2-related domain 153 409 IPR000330 GO:0005524|GO:0140658
Rops3g01433 877 MobiDBLite consensus disorder prediction 1 32 - -
Rops3g01433 877 MobiDBLite consensus disorder prediction 63 92 - -
Rops3g01433 877 SMART ultradead3 132 327 IPR014001 -
Rops3g01433 877 Gene3D - 113 368 IPR038718 -
Rops3g01433 877 CDD SF2_C_SNF 519 648 - -
Rops3g01433 877 Gene3D - 381 738 IPR027417 -
Rops3g01433 877 MobiDBLite consensus disorder prediction 63 79 - -
Rops3g01433 877 Pfam Helicase conserved C-terminal domain 525 637 IPR001650 -
Rops3g01433 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 692 IPR027417 -
Rops3g01433 877 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 265 274 IPR002464 -
Rops3g01433 877 FunFam Switch 2 118 368 - -
Rops3g01433 877 PANTHER SNF2/RAD54 FAMILY MEMBER 37 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01433 Rops-Chr3 21370392 21377314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01433 526 667 RAD5 or RAD16-like Gene Family AT5G43530 39.437 4.64e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops3g01433 SNF2_N 1.6e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01433 K20098 - gmx:100781003 1467.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01433 3 21370392 21377314 Rops3g01433 3 21370392 21377314 ECH