Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01428 ATGAAGATCCTTTACTCCAAACTCAACTCCCTTCTCCCTAACTATAATCCCAAGGAAGCGTTACCACTGCCTGAGCAAGTAGATGAGGCCATAAACTACATAAAGAGCCTAGAGGCAAAGGTGAAGATGGCTAAGGAGAAGATGGCTAAGGAGAAGAAAGAGAGCTTATTGGGAAGGAATAAGAGATCTCGTGGAGCTTTTGCTGCAACAGGTTTCCCCAAATCGCCAAGATTTGAGATTCATGAAATGGGTTCATCTCTAGAAGTTGTTCTCACATGTGGGTTAGACAATCAGTTCATTTTCTATGAAATCATTCGTGTACTTCATGAAGAGAACGTAGATGTCAGAAGTGCCAATTCCTCAATAGCTGGAGATTCAGTGCGTCACGTTGTCCATGCAGAGATTCCACAATCTTCTTTACAATTTGGAGCTACCAAAGTAAGTGAGAGATTGAAAAGGTTTGTGAATGGATCCTCCAGTGATGTGGAAATACAGCCCGAGTTGTGGGATTTTGAAATTGGTACTGATGATACGTGGAACTTCTAG 546 0.4212 MKILYSKLNSLLPNYNPKEALPLPEQVDEAINYIKSLEAKVKMAKEKMAKEKKESLLGRNKRSRGAFAATGFPKSPRFEIHEMGSSLEVVLTCGLDNQFIFYEIIRVLHEENVDVRSANSSIAGDSVRHVVHAEIPQSSLQFGATKVSERLKRFVNGSSSDVEIQPELWDFEIGTDDTWNF* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01428 181 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 52 IPR036638 GO:0046983
Rops3g01428 181 Coils Coil 27 54 - -
Rops3g01428 181 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 37 IPR011598 GO:0046983
Rops3g01428 181 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01428 Rops-Chr3 21237523 21238984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01428 1 157 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.415 6.39e-26 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01428 - - gmx:100817883 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01428 3 21237523 21238984 Rops3g01428 3 21237523 21238984 ECH