Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01424 ATGGGTTGCATATGTTCAAAGACTTCAGCTGTAGAAGACAGCAAGGAAGGTAGCGCAAAGAAATTGCCAACATATAGCACAAGGCATTCAGAGTTGAATGTTGTGAGATTGAATTCTACCAAGAGGGTTGAAGGGGGTAGGGTGAATGATGTGTCATTAGATGATAGAGGTGATGTGAAAGCTTCATTAATTGACAAAAAAACCAATGGCTCAGTGAAGTTATATGCTGATGATCAAGATGGAAAGAAGAAAATTGAAAAGCCTGAATTGACTGTTATTGATCATCCTGGCCTTGGAAGGGTTCCAAAGGCTACAGAAGCAGAGCAAGTTGCAGCAGGATGGCCAGTGTGGCTTTCTTCTGTTGCTGGTGAAGCTATCAAGGGATGGATACCAAGGAGTGCAAATACTTTTGAGAGGTTACATAAAATTGGGCAAGGAACATATAGTACTGTTTATAAGGCACGTGATGTGACTAACCAAAAGATTGTTGCGTTGAAGAGGGTGCGCTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTCCAGCATCCAAACATAATAAAGTTGGAGGGCTTGATAACTTCAGAGACCTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGACTTGCATCAAATCCTGCCATAAAGTTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGCATCCTCCACCGTGACATAAAGGGCTCAAATCTTCTAATTGACAATAATGGTGTCTTAAAGATTGCTGATTTTGGTTTGGCAAACTTTTTTGGCCCCCATAACAGTATTCCATTGACAAGCCGTGTAGTAACTCTCTGGTATAGACCACCTGAACTTTTACTCGGAGCCAATCATTACGGGGTTGCAGTGGATTTATGGAGTGCTGGTTGCATACTGGGTGAACTATATACTGGCAGGCCCATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGGACTTTTAAGCTTTGTGGCTCACCATCTGAGGACTATTGGCTTAAATTGCGGTTGCCACATTCAACTGTATTCAAGCCTCCACACCATTATAGGCGATGTGTTGCTGAGACATTTAAGGAATACCCATCTACTGCCATTAAGCTTATAGAGACCTTACTCTCTGTAGATCCAGCACATCGAGGGACAGCAGCTGATGCTCTGAATAGTGAGTTCTTTACATCTGAACCTTTGCCTTGTGATCCATCAACTTTACCAAAATACCCTCCCAGCAAGGAGATTGATGCTAAATTGCGGGATGAAGCCAGAAGGCAAGGAGCTGTTGGAGACAGGGAGCAAAAACTTGGCTCAGGGGTTAGACGAGAAAAAGGACCTAGAGCCCATGTCACAGCAAAAGACAATGCTGACTCGGGTGTATCAATACAGCAAGGGCAACGCCATTCCAGCTCAAAGAACCGAAGTGAATTTTCCTACCCTCATAGAGAACATGTGTCTGGGGTTTTGGGTTTCCCACACAAACAGTCAGAAGAATTTAAAATGGAAAATAATTTCTCTGGGAATCTTTATAAGAGGCCTTCACATTCAGGCCCATTGGTTCCTGGCTTTGGCTGGGCAAAGGGTGGGAAGGAAGTTGATGATGGGCCTCCTGTTTCAAACAGAGTGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGGACTTTGTTGTCTGAAGCCCAGGAAGCAAAACCAGTTCACTTGCACCACAGAAAACCAATTGAAGTAAGAAAATCCGTGGAGGCAACTAATGGATCAGAGTCAAGAAGAAGGCAGGATCAAAAACGGATTGTAGATCTCAGTCAAATTGAAAATAGAAGGGTCCCCACTGAAAAATTAACTCCGGATGGGCATGGGTCCAGAGGAAGCAAGATATACCTCTCAGGTCCATTAATGGTTTCATCAAGCAATATGGATCAGATGCTCAAAGATCATGATAGAAAGATCCAGGAGTTTTCAAGACGATCTAGAATTAACAAGTCAAGAGCAAGAGGTGACAAAGTCCGTGGACACAGGAAGTAG 2103 0.4337 MGCICSKTSAVEDSKEGSAKKLPTYSTRHSELNVVRLNSTKRVEGGRVNDVSLDDRGDVKASLIDKKTNGSVKLYADDQDGKKKIEKPELTVIDHPGLGRVPKATEAEQVAAGWPVWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREIHVLRRLQHPNIIKLEGLITSETSRSLYLVFEYMEHDLTGLASNPAIKFSEPQLKCYMQQLLSGLDHCHSHGILHRDIKGSNLLIDNNGVLKIADFGLANFFGPHNSIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSAGCILGELYTGRPILPGKTEVEQLHRTFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCVAETFKEYPSTAIKLIETLLSVDPAHRGTAADALNSEFFTSEPLPCDPSTLPKYPPSKEIDAKLRDEARRQGAVGDREQKLGSGVRREKGPRAHVTAKDNADSGVSIQQGQRHSSSKNRSEFSYPHREHVSGVLGFPHKQSEEFKMENNFSGNLYKRPSHSGPLVPGFGWAKGGKEVDDGPPVSNRVNLSKLSGLVASRTLLSEAQEAKPVHLHHRKPIEVRKSVEATNGSESRRRQDQKRIVDLSQIENRRVPTEKLTPDGHGSRGSKIYLSGPLMVSSSNMDQMLKDHDRKIQEFSRRSRINKSRARGDKVRGHRK* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01424 700 FunFam probable serine/threonine-protein kinase At1g54610 124 219 - -
Rops3g01424 700 CDD STKc_CDK9_like 137 421 - -
Rops3g01424 700 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01424 700 MobiDBLite consensus disorder prediction 590 645 - -
Rops3g01424 700 SUPERFAMILY Protein kinase-like (PK-like) 130 429 IPR011009 -
Rops3g01424 700 PANTHER CELL DIVISION PROTEIN KINASE 135 427 - -
Rops3g01424 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Rops3g01424 700 Gene3D Transferase(Phosphotransferase) domain 1 220 460 - -
Rops3g01424 700 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01424 700 MobiDBLite consensus disorder prediction 669 686 - -
Rops3g01424 700 Gene3D Phosphorylase Kinase; domain 1 124 219 - -
Rops3g01424 700 FunFam probable serine/threonine-protein kinase At1g54610 220 460 - -
Rops3g01424 700 MobiDBLite consensus disorder prediction 669 700 - -
Rops3g01424 700 MobiDBLite consensus disorder prediction 449 478 - -
Rops3g01424 700 MobiDBLite consensus disorder prediction 589 656 - -
Rops3g01424 700 MobiDBLite consensus disorder prediction 449 508 - -
Rops3g01424 700 MobiDBLite consensus disorder prediction 483 500 - -
Rops3g01424 700 SMART serkin_6 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01424 700 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01424 Rops-Chr3 21163162 21170167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01424 129 463 Core Cell Cycle Gene Families AT5G10270 48.718 2.83e-113 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops3g01424 Pkinase 5.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01424 - - gmx:100807590 1153.66