Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01412 ATGACACCAATCATGAAGCACTCGCCGGAAATCCAACCAGTACCGGTAGAGCAACAACGACCAGAGATTCCCCGGGAAATTCTTATCACCGTCGTGGTGGATGAATCGCCGCCAAGAAACGAAGGTTCTGTGCTGTGCTTGGCTCCCGAAGTTGTCGTCGAGGAGCTGCTGGATCTCTTGTCGGAATTTCTCCTCGCCGATTTCCACGGCGACATGTTGGAGAAGCGTGACGTTCAACAGTGGCGTCGGGGAATCCAAAGTTCCTTCCATTTCATTGAGCTTCCAACATTCTTAAGAGACCTTGCTGTTGTGATTGCACCCTTCAAACACAAGTCCTTCCCTTCTCTACTTATCTGTTCAGGTACCTGTAAGAGAACATTCTGTAACACAAAAAGAAAAATGGCCTTAGATGAGTACTTGGAGGAATCTGTGTCCCAAATTGATTCCTGTGATGATAAACAATCTTTGAGAAAGTGGAAATCCTCTGGTAATGTCATTGCAGAGTCTGATAGAAATGCTGCTGGTGGCTTTGACTGTAACATCTGCTTGGACTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTTTACTGCTGGCCCTGCATTTACAAATGGCTTCATTTACAAAGTATATCCTCAGAAAACATGGAGCAGCAGAATCCACAATGTCCAGTTTGCAAATCAGAAGTTTCTCAATCCTCCCTAGTTCCAATATATGGCCATGGCCAAACCACAAAACCTTCTGAAGGGAAGGCCCATCAAGTAGGGTCTGTTATACCAAGAAGACCCCAGGGTCCCAGATCATATAATACTACAACTGTTTCTCAACCTACTTCTCAAAGTTATCAACCCCATCATTCATATCATCCTCAAGAATTCAACTCAATTCCAAGGAATTACACCTCACCAATGTTTAGCACAAGTGGTTCACTAGATAACACATTTGGAATCTTTGGTGAGATGATATATTCAACTGTCTTTGGTAACCAGGTTGCAAACATATATGCATATCCTAATTCATATAATCTCTCTGGGAACAGAAACCCAAGGATCAGAAGGCATTTAATGGAAGTTGATAAATCACTCAACAGAATCTGTTTTTTCCTCCTTTGTTGTCTAGTTTTGTGTCTTCTCTTGTTCTGA 1146 0.4302 MTPIMKHSPEIQPVPVEQQRPEIPREILITVVVDESPPRNEGSVLCLAPEVVVEELLDLLSEFLLADFHGDMLEKRDVQQWRRGIQSSFHFIELPTFLRDLAVVIAPFKHKSFPSLLICSGTCKRTFCNTKRKMALDEYLEESVSQIDSCDDKQSLRKWKSSGNVIAESDRNAAGGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLHLQSISSENMEQQNPQCPVCKSEVSQSSLVPIYGHGQTTKPSEGKAHQVGSVIPRRPQGPRSYNTTTVSQPTSQSYQPHHSYHPQEFNSIPRNYTSPMFSTSGSLDNTFGIFGEMIYSTVFGNQVANIYAYPNSYNLSGNRNPRIRRHLMEVDKSLNRICFFLLCCLVLCLLLF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01412 381 SMART ring_2 179 227 IPR001841 -
Rops3g01412 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 241 IPR013083 -
Rops3g01412 381 ProSitePatterns Zinc finger RING-type signature. 194 203 IPR017907 -
Rops3g01412 381 MobiDBLite consensus disorder prediction 265 288 - -
Rops3g01412 381 SUPERFAMILY RING/U-box 176 240 - -
Rops3g01412 381 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 162 241 - -
Rops3g01412 381 ProSiteProfiles Zinc finger RING-type profile. 179 228 IPR001841 -
Rops3g01412 381 Pfam Zinc finger, C3HC4 type (RING finger) 179 227 IPR018957 GO:0046872
Rops3g01412 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 148 378 IPR045103 GO:0005783|GO:0006511|GO:0061630
Rops3g01412 381 CDD RING-HC_AtRMA-like 177 229 - -
Rops3g01412 381 MobiDBLite consensus disorder prediction 244 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01412 Rops-Chr3 20978929 20985100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01412 172 381 C3H Transcription Factor Family AT4G28270 40.000 1.50e-46 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01412 K10666 - gmx:100786373 341.658