Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01410 ATGACTACTACCACTACTTCAGAGGAGTTAACACTCTCTTACAAAGCTTTAAACGATGCTTGCCCTTATTCAAAGTTTGCACATTTAACTGTTAATCAAGCTATACTTGAAGCTACAGAAGGAGCCAGTGAGATTCACATAGTTGATTTTGGGATTGTTCAAGGGATTCAATGGGTTACATTGTTGCAAGCATTTGCTACATGTTTTTCTAGGAAGCCTCAAAGGATAAGAATTATAGGGATACTTGCTATGGCTTTTGGAACTTCACCTGGTCCTTCTCTTTCTGCAATTGGGAATCGTCTTTCTGAGTTTGCAAAGCTTGTTGGGTTGAATTTCGAGTTTGATCACCGCTTTCCTTTTCCTTTTTCTTGGTTCCCAAGGGGTATTTCTAGCCCTTTGGACTAA 405 0.3951 MTTTTTSEELTLSYKALNDACPYSKFAHLTVNQAILEATEGASEIHIVDFGIVQGIQWVTLLQAFATCFSRKPQRIRIIGILAMAFGTSPGPSLSAIGNRLSEFAKLVGLNFEFDHRFPFPFSWFPRGISSPLD* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01410 134 ProSiteProfiles GRAS family profile. 1 134 IPR005202 -
Rops3g01410 134 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 115 IPR005202 -
Rops3g01410 134 Pfam GRAS domain family 3 115 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01410 Rops-Chr3 20933016 20935727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01410 8 114 GRAS Transcription Factor Family AT5G66770 70.093 1.30e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops3g01410 GRAS 3.2e-33 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01410 - - vum:124844288 176.792