Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01401 ATGCAGAGCCACCACGTGTCGAATCTGAGCCTCTTCTGCTTCTCCTTTGCCTTGAAATTCGCGCTGCTGTGCGCGGCGGTGGGACAACCTCAGCACCGTTCTCTTGACCTACATTGGTTTCCAGGCACCGCCACCTGGTACGGCGACCCTGAAGGCGACGGTAGCACCGGTGGGGCATGTGGATATGGAACAATGGTGGACGTGAGGCCATTAAGGGCGCGTGTGGGTGCCGTGGGACCGTTGCTGTTCATGAACGGTGAAGGGTGCGGTGCGTGCTACAAGGTAAAGTGTTTGGACAAGAGCATTTGTTCAAGGCGTGCCGTTACTGTCATAATCACCGACGAGTGCCCCGGTTGCCCCTCCGACCAAACCCACTTCGACCTCAGTGGTGCTGCCTTTGGCCGCATGGCTATCGCCGGCGAGAACGGTCCACTCAGAAACCGTGGTCAAATCCCAGTCATTTACAGAAGAACACCATGTAAATATCCGGGAAGAAAAATTGCCTTCCATGTTAATGAAGGTTCCACACCATTTTGGTTATCACTTCTGGTTGAGTTTGAGGATGCAGAGGGAGATATTGGCTCCATGCATATACGAGAAGCTGGGTCTAGCGAGTGGCTGCAGATGAGTCATTTGTGGGGTGCAAATTGGTACATTATAGGAGGACCTTTAAGGGGACCATTCTCTGTGAAAGTAAGCTCTTCCACTGGGAGGACGCTCTCTGCAAGTGATGTTATCCCAGGCAGTTGGGTTCCAAAGGCCACTTACACTTCTCGCCTAAATTTCTACCCCTAG 795 0.5296 MQSHHVSNLSLFCFSFALKFALLCAAVGQPQHRSLDLHWFPGTATWYGDPEGDGSTGGACGYGTMVDVRPLRARVGAVGPLLFMNGEGCGACYKVKCLDKSICSRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAIAGENGPLRNRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIREAGSSEWLQMSHLWGANWYIIGGPLRGPFSVKVSSSTGRTLSASDVIPGSWVPKATYTSRLNFYP* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01401 264 SUPERFAMILY Barwin-like endoglucanases 38 164 IPR036908 -
Rops3g01401 264 SUPERFAMILY PHL pollen allergen 165 258 IPR036749 -
Rops3g01401 264 Gene3D - 25 160 IPR036908 -
Rops3g01401 264 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Rops3g01401 264 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Rops3g01401 264 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Rops3g01401 264 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Rops3g01401 264 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Rops3g01401 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Rops3g01401 264 PANTHER EXPANSIN-B3 22 262 - -
Rops3g01401 264 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Rops3g01401 264 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576|GO:0019953
Rops3g01401 264 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Rops3g01401 264 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Rops3g01401 264 PRINTS Major pollen allergen Lol pI signature 137 152 IPR005795 GO:0005576|GO:0019953
Rops3g01401 264 SMART dpbb_1 75 155 IPR007112 -
Rops3g01401 264 Pfam Lytic transglycolase 80 154 IPR009009 -
Rops3g01401 264 Gene3D - 161 259 IPR036749 -
Rops3g01401 264 CDD DPBB_EXPB_N 39 160 - -
Rops3g01401 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 165 IPR007112 -
Rops3g01401 264 Pfam Expansin C-terminal domain 167 247 IPR007117 -
Rops3g01401 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Rops3g01401 264 FunFam Expansin B3 25 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01401 Rops-Chr3 20850900 20854327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01401 11 200 Expansin Gene Family AT4G28250 70.526 9.90e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01401 K20628 - gmx:100810778 499.975