LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g01392	ATGGCTGAAGCAAAGAACAGTGGAAAATTCACCAAGGAGGAATGTGTTGATGAGACTCCAAAGGTTATTGGTGAAAGTGAAAAAAGTGAAAGTCAAGATTGGGAAATGGAGAAGGGAAAGGGTCTTGAATTTAGCTCAGGGAGGCGGCAATGGGAGCCAGTTTTTGATGATGTTTCCATGCCACATAGACCTCTCAAGAAGATTTGTAGCCCTGAACACCAAAACCCAAAAAATCAACCATCCTCTGTGCTATCTCTACAACCTCCTTCTTCCTCCTCAGTTCCTCCTTCATCTAGAATAGTCTTTCCTTTTGCTTTTGAAGGGTCTCAACCTCCAATGCCATTCCCACACCAATCTGGAACCCCTAATTTTCCTCCTTTTCACCCACCTCTTCAACCAACACAACAAATGATATCTTTTGGGGCCCAACAGAACATGGGGTATTCTGCTGTGCCTCACCAACACCAACAACTTGCACAGTGTTGGAGTGATGCACTGAATCTAAGTCCAAGAGGAAGCATGACAATGATGAACAGGTTGGGACCAGATGGGAGACCAATGTTAAGACCCCAAGTACAACCTTTGAATGCTACAAAGCTCTACAGGGGAGTGAGGCAACGCCATTGGGGTAAATGGGTAGCTGAGATTCGTCTACCTCGCAATAGGACTCGCCTCTGGCTAGGCACATTTGACACTGCTGAAGATGCTGCTATGGCATATGATCGTGAGGCATTTAAGCTTAGAGGAGAGAATGCTAAGCTCAATTTCCCTGAGCTCTTCCTTAACAAGGATAAAGCATCATCGACGACAACAGCTCCAACTTCTTCTTCTACTTCTTCATTCCAGGAAGGTTCAACGTCAAGCCAGAACACTGAGCAACTTGAACAAGTTCCTGAAGACCATAACATGCAGGGTGTCAATGCTGAGAACATGCCAACACCGGCACCACTAACAGAAGAGAATGTTGAGAATGAGGCTGAGACTGGGGACAACGTTTCACAGTCTCAGGAATTGGTTTGGGGAGAAATGGCTGCTTGGTTCAATGCAATTCCTGCAGGTTGGGGACCTGGTAGTCCTATGTGGGATGATTTGGACCCAAACAATAATCTTCTTTTGCAGTCACATATTCCTTTTGTGAATCCAAATCAGCAAGAATTTCATGATGGTGATGATGCTCAGAGACAAGAAGATGATAACACAGGACCAGGTTCTTCCTCTTCCTCTTGTCCCATGAGGCCCTTTTTATGA	1248	0.4527	MAEAKNSGKFTKEECVDETPKVIGESEKSESQDWEMEKGKGLEFSSGRRQWEPVFDDVSMPHRPLKKICSPEHQNPKNQPSSVLSLQPPSSSSVPPSSRIVFPFAFEGSQPPMPFPHQSGTPNFPPFHPPLQPTQQMISFGAQQNMGYSAVPHQHQQLAQCWSDALNLSPRGSMTMMNRLGPDGRPMLRPQVQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKASSTTTAPTSSSTSSFQEGSTSSQNTEQLEQVPEDHNMQGVNAENMPTPAPLTEENVENEAETGDNVSQSQELVWGEMAAWFNAIPAGWGPGSPMWDDLDPNNNLLLQSHIPFVNPNQQEFHDGDDAQRQEDDNTGPGSSSSSCPMRPFL*	416

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g01392	415	MobiDBLite	consensus disorder prediction	55	70	-	-
	Rops3g01392	415	SUPERFAMILY	DNA-binding domain	200	258	IPR016177	GO:0003677
	Rops3g01392	415	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	33	364	-	-
	Rops3g01392	415	ProSiteProfiles	AP2/ERF domain profile.	200	257	IPR001471	GO:0003700\|GO:0006355
	Rops3g01392	415	SMART	rav1_2	200	263	IPR001471	GO:0003700\|GO:0006355
	Rops3g01392	415	MobiDBLite	consensus disorder prediction	1	96	-	-
	Rops3g01392	415	FunFam	Ethylene-responsive transcription factor 2	199	258	-	-
	Rops3g01392	415	CDD	AP2	199	259	IPR001471	GO:0003700\|GO:0006355
	Rops3g01392	415	MobiDBLite	consensus disorder prediction	265	333	-	-
	Rops3g01392	415	PRINTS	Ethylene responsive element binding protein signature	201	212	IPR001471	GO:0003700\|GO:0006355
	Rops3g01392	415	PRINTS	Ethylene responsive element binding protein signature	223	239	IPR001471	GO:0003700\|GO:0006355
	Rops3g01392	415	MobiDBLite	consensus disorder prediction	72	96	-	-
	Rops3g01392	415	Gene3D	AP2/ERF domain	200	258	IPR036955	GO:0003700\|GO:0006355
	Rops3g01392	415	MobiDBLite	consensus disorder prediction	398	415	-	-
	Rops3g01392	415	MobiDBLite	consensus disorder prediction	1	45	-	-
	Rops3g01392	415	Pfam	AP2 domain	201	249	IPR001471	GO:0003700\|GO:0006355
	Rops3g01392	415	MobiDBLite	consensus disorder prediction	380	415	-	-
	Rops3g01392	415	MobiDBLite	consensus disorder prediction	265	300	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g01392	Rops-Chr3	20658958	20660205	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g01392	1	364	AP2-EREBP Transcription Factor Family	AT2G20880	42.553	8.20e-66	211

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Rops3g01392		AP2	2.7e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g01392	-		-	gmx:100811328	505.368