LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g01386	ATGGAGACTGTTCTTTCCAAACACTCCCCACCTTCGGTCTTCAAGGGTGTGAGCACGGAGGAGGAGGAAGATTTGCTTGGGCAAATTGAGATATGGAAATACATGTGTAGCTTCACTGACTCCGTTGCTTTGAAATGTGCTGTGGAGTTGCGCATAGCTGACATAATAGACCGTTATGGTAAACCACTATCCTTGTCTCAAATTGTTGAGAATCTTGAAGATGCACCCTCCCCAGATATTGCCTTGCTCGAAAGAATCATGAGAGTGATGGTTCGTAGAAGGATATTCAGTGCAGAGAAATCAGGGAATGGAGAAACTCTTTATGGCATGACACGTGCTTCAAAATGGATCCTAAGGGACACAAAAATGACCTTGGCACCCATGTTGCTGCTAGAGAATCATCCAATACATTTGAACCCTGCTCACTATATTAGTGACACTATCAAAGAAGGCTTAAAAAATGGCACTCCTTTCTTAAGGTGCCATGGTCATGATCAATTTGAAATGACTGGTATGGATGCTGATTATAACAGGTTGTTCAATGAGGGTATGGTTTGCACGGCTAGGATTGTGAGCAAGGCTGTTATCTCAGGATACAAAGATGGGTTCAACAAGATTAAATCCTTGGTTGATGTTGGTGGTGGTATTGGAGGATCATTATCTGAGATTGTTAGAGCTTACCCTCACATCAATGCTATTAACTTTGACTTGCCTCATGTGGTTGCCACTGCTCCCAAGTATGATGGAATCACCCATGTTGGAGGAGACATGTTCGTGTCCATTCCTGATGCTGATGCTATTTACATGAAGTGGATTCTTCATGACTGGAGTGATGAACACTGCATCAAGATTTTGAAGAACTGCAGGAAGGCAATACCAGAGAAGACAGGAAAGGTGATAATTGTGGATCACGTGCTGGAGCCAGAAGGGAATGGTCCATTTTGTGATACAGGCCATGCATTTGACATGATGCTTCTTGCACACAACTCTGGTGGGAAAGAAAGGACTGAAGAAAACTGGAAATACCTTTTCAAAGAAACAGGGTTCCCTCGTTACAACATCATCAAGATCAATGCTCTGCCATCAATCATTGAGGCATTTCCAATCTGA	1110	0.4297	METVLSKHSPPSVFKGVSTEEEEDLLGQIEIWKYMCSFTDSVALKCAVELRIADIIDRYGKPLSLSQIVENLEDAPSPDIALLERIMRVMVRRRIFSAEKSGNGETLYGMTRASKWILRDTKMTLAPMLLLENHPIHLNPAHYISDTIKEGLKNGTPFLRCHGHDQFEMTGMDADYNRLFNEGMVCTARIVSKAVISGYKDGFNKIKSLVDVGGGIGGSLSEIVRAYPHINAINFDLPHVVATAPKYDGITHVGGDMFVSIPDADAIYMKWILHDWSDEHCIKILKNCRKAIPEKTGKVIIVDHVLEPEGNGPFCDTGHAFDMMLLAHNSGGKERTEENWKYLFKETGFPRYNIIKINALPSIIEAFPI*	370

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g01386	369	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	32	368	IPR016461	GO:0008168
	Rops3g01386	369	Pfam	Dimerisation domain	43	91	IPR012967	GO:0046983
	Rops3g01386	369	SUPERFAMILY	"Winged helix" DNA-binding domain	21	120	IPR036390	-
	Rops3g01386	369	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	123	366	IPR029063	-
	Rops3g01386	369	PANTHER	O-METHYLTRANSFERASE	31	351	IPR016461	GO:0008168
	Rops3g01386	369	PIRSF	O-mtase	13	369	IPR016461	GO:0008168
	Rops3g01386	369	Gene3D	Vaccinia Virus protein VP39	119	369	IPR029063	-
	Rops3g01386	369	Pfam	O-methyltransferase domain	143	349	IPR001077	GO:0008171
	Rops3g01386	369	Gene3D	-	15	117	IPR036388	-
	Rops3g01386	369	FunFam	O-methyltransferase family protein	119	367	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g01386	Rops-Chr3	20557259	20566636	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g01386	42	355	Monolignol Biosynthesis Gene Families	AT5G54160	40.498	1.25e-78	244

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g01386	K22588		-	gmx:100800801	653.284

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