Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01378 ATGGAGGATCAGGAAATTTTGGGTGGTGTTGGAAGAGAGGAAGAGGAAGATGAGTTTTGTAGTTGTTGTGAAGATGAGGAGGAAGTATGGAAGGAAATTCAGGAGGAAGAATCGAAGGATGACCTTGATGAATTTTCGGTGAAGTTGTTTTTCAAGGGCTTGTCAGTAGCTGGGGTTGAAAATTCTGGTTCTGGGTTTTCTGGAATTGGAGTGTTCATGGAAAGAGCATCTAGTCTTCCTATTATTAGGGTGCAGAAAAGACTTGATTTTTATGCAGAGGAGCCACTAATTGACTACTTGGCTTTCATGGATGGTTTGCTGGAAGCTGCACAGAACAAGATCCGCAGGGTTTATGCTTTTACAGATTCCGAGTTGTTGTACCATCAAATAACATGTGATGAAAATCTTGAGATGCCACTTTTGATTGCATTGAGAGAAAGGATTCTGGAACATGCCAATAATTTTGAAGCTTTTACTCTGAATCTTGTTCCAAGTATTGATCTTGAGAAGCCCCTGCAATTAGCCAAAGTAGCAATTGGACTAGTCACTTTTCCTGTAAATGGCAAGAGTTTACTTGAGAGCTGTTCTATTTGTTGTGAAGACAAGCCGTTGCCAATTATGATCACCATGAAATGTTTACACAAGTTCTGTTCATGTTGCTTGAGGGCCTATGTTGATGGAAAAGTACAATCTTGTCAAGTCCCTGTAAGATGTCCTGAACCAGGATGCAAATATTACATCTCTGTCACTGAGTGCAGGTCTTTCCTACCATTCACTTCCTTTGAGTCTTTGGAGAAAGCCCTTGCAGAAGCAAATTTCCTCCATTCAGATAGAATTTACTGTCCATTTCCAAATTGTTCTGTTCTCCTTGCTCCCCAAAAATGGTTATCAGCCAGGGCTAGTTCATCTAGTCAGTCAGACAATATAATTATTAGATTATCCCTCCATCGACTTCTCCTTATCAATTGA 969 0.4025 MEDQEILGGVGREEEEDEFCSCCEDEEEVWKEIQEEESKDDLDEFSVKLFFKGLSVAGVENSGSGFSGIGVFMERASSLPIIRVQKRLDFYAEEPLIDYLAFMDGLLEAAQNKIRRVYAFTDSELLYHQITCDENLEMPLLIALRERILEHANNFEAFTLNLVPSIDLEKPLQLAKVAIGLVTFPVNGKSLLESCSICCEDKPLPIMITMKCLHKFCSCCLRAYVDGKVQSCQVPVRCPEPGCKYYISVTECRSFLPFTSFESLEKALAEANFLHSDRIYCPFPNCSVLLAPQKWLSARASSSSQSDNIIIRLSLHRLLLIN* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01378 322 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Rops3g01378 322 ProSiteProfiles TRIAD supradomain profile. 191 322 IPR044066 -
Rops3g01378 322 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 91 291 IPR031127 GO:0004842|GO:0016567
Rops3g01378 322 SUPERFAMILY RING/U-box 193 268 - -
Rops3g01378 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 276 IPR013083 -
Rops3g01378 322 FunFam RBR-type E3 ubiquitin transferase 190 275 - -
Rops3g01378 322 ProSiteProfiles Zinc finger RING-type profile. 195 239 IPR001841 -
Rops3g01378 322 FunFam RBR-type E3 ubiquitin transferase 47 182 - -
Rops3g01378 322 Gene3D - 49 181 IPR036397 GO:0003676
Rops3g01378 322 Pfam Reverse transcriptase-like 61 164 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01378 Rops-Chr3 20302629 20303685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01378 46 291 C3H Transcription Factor Family AT2G19610 23.413 1.56e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01378 - - gmx:100783040 448.743