Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01367 ATGCGTTGGTCTTCCTTCTATCACACAGCCTCAAGGGTTTATCATGAGTATCCATCTTGGTCCAAAGCTGTTGTTGTATGCACTGTTATCAGTGGTGGAGGTGTATTGGCATATGGTGATTATGGTGATCAAACCCCAAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTTTGAAAAGCATGAAAAACTCCAACTATGATATTCATGTGGTTTCACCGCGTAACTATTTTGCATTCACTCCTCTGCTACCAAGTGTTACATGTGGCACAGTAGAGGCAAGGAGCATTGTTGAACCAATTCGAAATATCACCCGGCGGAGTGGTGTAGACATTCATTTCAGTCAAGCTGAATGCTATAAGATCGATCCCAAGAACAACAAAGTTTACTGCCGTGCTGCTGGTGAAGGGAAAAAGCTGGGTGGCCTAGAAGAATTTTCCATTGATTATGATTACTTGGTAATAGCTATGGGAGGCCGTTCTAATACCTTTAACACACCTGGTGTTCCGGAGCATGCCTACTTCTTGAAGGAAGTGGAAGAAGGTCTAAGAATCCGTAAAGAAGTGATCAATCTTTTTGAAAGAGCAAGCCTCCCTTCGGTACCAGTGGAAGAGAAGAAAAAGCTTCTCAGTTTTGTAGTCGTTGGTGGTGGTCCAACAGGGGTTGAGTTTTCTGCAGAGCTTCATGACTTTGTACACGATGATCTATCTAAATTATATCCTTCTCTTAAAGACTATGTGAAGATTACTCTCCTTGAGGCTGGCGATCATATCTTAAACATGTTTGACAAGAGAATTACAGAATTTGCTGAACAAAAGTTCAAAAGAGATGGCATTGATGTGAAATTGGGATCTATGGTTGTCAAAGTCAGTGAAGATGAAATCACTGCCAAAGAAAGAGGAACTGGTCAAGTTGTTACTATACCTCATGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCAGAAATACTTGAATTTATGAAGCAGATGGGCCAGATTAACAGACGTGCATTAGTTACTGATGAATGGCTAAGAGTGGAAGGATCTGATAACATCTATGCTCTAGGTGATTGTGCCACTATAAATCAGCGCAAAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCAGACAAGGAAAATTCTGGAAAGTTAGATCTTAAAGAATTTAAAGAAGTTGTTGGGGACATTATTGAGAGGTACCCACAAGTGGATATTTATTTAAGGAAGAACCAAATGAAAGACTTGGCCAGCTTGCTAAGGAAATCTAAGGAAACCAATGTTACAGTGGACATTGAATACTTTAAAGAAGCTCTTTCCAAAGTAGATTCTCAGATGAAAAATCTTCCAGCAACTGCTCAGGTAGCTGCTCAGCAAGGAGCCTATCTTGCAGACTGTTTCAATCGCATGGAGTTGTGTGAGCAGTATCCTGAAGGCCCTCTCAGGTTCAGGGGAATAGGACGCCATCGGTTTCGTCCCTTCAGGTACAAGCATTTGGGACAATTTGCTCCTCTAGGAGGAGAACAAACTGCAGCTCAGCTTCCAGGAGATTGGGTTTCAATTGGTCAGAGCACCCAGTGGCTCTGGTATTCGATATATGCAAGCAAACAAGTCAGCTGGAGAACAAGGGCATTGGTAGTAGCTGACTGGGGAAGGAGATTTGTATTTGGCAGGGACTCAAGTAAAATCTGA 1710 0.424 MRWSSFYHTASRVYHEYPSWSKAVVVCTVISGGGVLAYGDYGDQTPKKKVVVLGTGWAGTSFLKSMKNSNYDIHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNITRRSGVDIHFSQAECYKIDPKNNKVYCRAAGEGKKLGGLEEFSIDYDYLVIAMGGRSNTFNTPGVPEHAYFLKEVEEGLRIRKEVINLFERASLPSVPVEEKKKLLSFVVVGGGPTGVEFSAELHDFVHDDLSKLYPSLKDYVKITLLEAGDHILNMFDKRITEFAEQKFKRDGIDVKLGSMVVKVSEDEITAKERGTGQVVTIPHGMVVWSTGIGARPEILEFMKQMGQINRRALVTDEWLRVEGSDNIYALGDCATINQRKVMEDIAVIFSKADKENSGKLDLKEFKEVVGDIIERYPQVDIYLRKNQMKDLASLLRKSKETNVTVDIEYFKEALSKVDSQMKNLPATAQVAAQQGAYLADCFNRMELCEQYPEGPLRFRGIGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGQSTQWLWYSIYASKQVSWRTRALVVADWGRRFVFGRDSSKI* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01367 569 PANTHER NADH DEHYDROGENASE 44 569 IPR045024 GO:0003954|GO:0006116
Rops3g01367 569 SMART efh_1 375 403 IPR002048 GO:0005509
Rops3g01367 569 Pfam Pyridine nucleotide-disulphide oxidoreductase 48 374 IPR023753 GO:0016491
Rops3g01367 569 SUPERFAMILY EF-hand 365 455 IPR011992 -
Rops3g01367 569 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 415 568 - -
Rops3g01367 569 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 40 400 - -
Rops3g01367 569 SUPERFAMILY FAD/NAD(P)-binding domain 208 368 IPR036188 -
Rops3g01367 569 SUPERFAMILY FAD/NAD(P)-binding domain 47 267 IPR036188 -
Rops3g01367 569 Gene3D - 414 569 - -
Rops3g01367 569 Gene3D - 41 401 - -
Rops3g01367 569 PRINTS FAD-dependent pyridine nucleotide reductase signature 50 69 - -
Rops3g01367 569 PRINTS FAD-dependent pyridine nucleotide reductase signature 343 365 - -
Rops3g01367 569 PRINTS FAD-dependent pyridine nucleotide reductase signature 154 172 - -
Rops3g01367 569 PRINTS FAD-dependent pyridine nucleotide reductase signature 215 233 - -
Rops3g01367 569 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01367 Rops-Chr3 20170641 20176091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01367 1 569 Chloroplast and Mitochondria Gene Families AT4G21490 67.238 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01367 K03885 - gmx:100820044 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01367 3 20170641 20176091 Rops3g01367 3 20170641 20176091 ECH