Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01359 ATGGGAAGAGTTCCTTGCTGTGACAAGAATGGACTCAAGAAGGGTCCATGGACACCTGAGGAAGACCTTAAGCTCATCAACTACATTCAGATTCATGGACCAGGCAATTGGCGAACACTCCCTAAGAATGCCGGTTTGCAAAGGTGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACCTGAGACCCGATATAAAGAGAGGAAGATTCACCTTGGAAGAAGACGATGTCATCATTCAGTTGCACAGTATCTTGGGAAACAAATGGTCGGCTATAGCAGCTAGGTTGGCTGGAAGAACTGACAATGAAATAAAGAACCATTGGAACACTCACATTAGGAAGAGGCTGCTTCGAATGGGAATTGACCCAGTTACTCACGCCCCACGCCTTGAACTACTTGACATGTCCTCTATTTTAAGGTCACTCTCCCTTTTGAATGTGCAAGGTTTATTGGGTGTCCAAACTGCGATGAACCCGGAGTTGTTAAAGCTGGCTGCCACTGCCTCTCTTCTATCCATCAAGAATGAGAACTCAGATTTGGCTTCACAGAATCTACAAGTACAAAGCCAAGTTGCACCACCACTTGAGTTTAATCAGTTTCAAGCACCTACTCAGACCTCAAATGTGGAAGGCTTCTCAGGCAACATGGCAATTAACTTGAGCTGTTCAAGTTCCTCACTGAATTCAACCCCTTCTTCCTATCAGGGGGAGAACCTTATTTTGCAACAAAACCAAGTTGATTTGCTTGAGAACCTGGCTTTGGTCAATGCAAGCCAAAACATGGGCTATGACTCAGTTCTGCCTACGCCTCTATCAAGTCCAAACCAGTTGAACTCATCATCAGTGTGTGTGAACAATAGCACGGAGGAAGAGAGGAATAGCTATTGTAGTGACTTGTTCAAGTTCGAAATTCCAGAGAGTCTGGATATCAGTGATGACTTCTTTGTTCTGTCTCACTAG 960 0.449 MGRVPCCDKNGLKKGPWTPEEDLKLINYIQIHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTLEEDDVIIQLHSILGNKWSAIAARLAGRTDNEIKNHWNTHIRKRLLRMGIDPVTHAPRLELLDMSSILRSLSLLNVQGLLGVQTAMNPELLKLAATASLLSIKNENSDLASQNLQVQSQVAPPLEFNQFQAPTQTSNVEGFSGNMAINLSCSSSSLNSTPSSYQGENLILQQNQVDLLENLALVNASQNMGYDSVLPTPLSSPNQLNSSSVCVNNSTEEERNSYCSDLFKFEIPESLDISDDFFVLSH* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01359 319 FunFam MYB-related transcription factor 13 66 - -
Rops3g01359 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops3g01359 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops3g01359 319 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops3g01359 319 CDD SANT 69 112 IPR001005 -
Rops3g01359 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops3g01359 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops3g01359 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops3g01359 319 CDD SANT 16 61 IPR001005 -
Rops3g01359 319 Gene3D - 13 66 - -
Rops3g01359 319 SMART sant 66 114 IPR001005 -
Rops3g01359 319 SMART sant 13 63 IPR001005 -
Rops3g01359 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
Rops3g01359 319 Gene3D - 69 116 - -
Rops3g01359 319 FunFam MYB transcription factor 68 129 - -
Rops3g01359 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01359 Rops-Chr3 19999698 20001273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01359 1 310 MYB Transcription Factor Family AT4G21440 49.296 9.55e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g01359 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01359 K09422 - gmx:100817731 419.083