Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01348 ATGGAGTTGGACCTTGAAAACCCTTTAGAAAATTTCCAAGACTTTCATTGTGATGCTGTCTCTTCTCTCTTCCTCATTGAATCTGACCACGTCCCACCACAAAATTACTTCCAGACCCTTAAAGCCAGAGATCTTGACCTCTATGCTAGAACAGAAGTCATCTCTTTAATCTCACAGTTGTCCTGCACTTTGGATCCACTTTTGTCTTACCTTGCTATCAATTATTTGGACCGGTTCCTGGCCAACCAAGGGATATTGCAACCAAAGCCATGGGTCATCAGGCTTCTTGCAGTCTCTTGCATTTCTCTAGCTACGAAGATGATGAGAACAGAGTACTCTGCCACTGATGTCCAGGCCTTTTTGAAGCTAAGTGATGGTGGCATCATCTTTGAGACACAAACAATACAAAGAATGGAAGCACTTATCTTGGGAGCTTTACAATGGAGAATGCGATCGATCACCCCTTTTTCTTTCATATCTTTCTTCATTACTTTGTTCAAGCTCAAAGATCCACCAATGGGGCAGGTTCTGAAAAATCGAGCTTCTGAAATCATATTCAAGTCACAAAGAGAGATAAAGCTTTGGGAATTCAAGCCATCCATAATTGCCGTATCAGCACTGCTTTGTGCTTCTCATGAGTTATTTCCTTTTCAATACCCGTGCTTCTTAGGAACATTATCCAATTGTTCATACATAAATAAAGAAAGCGTGTTACAGTGCTATAATGTGATACAAGATATAGCTATAGAGGAGGAGAATGAGTCTCTGTTAAACGCTGTTTCAAGTTCAGACACACCGGTTAATGTGTTGAACCATCATTTTCTAAGTTCAGAAAGTGAAAAAACCAATGGAATCACCGTTGATGCTTCTCCTCTGAGACAAGAGAAGGACCTCAAGAGAAGGACCAACGAGCCAGAATTCTCGGATTAA 930 0.4086 MELDLENPLENFQDFHCDAVSSLFLIESDHVPPQNYFQTLKARDLDLYARTEVISLISQLSCTLDPLLSYLAINYLDRFLANQGILQPKPWVIRLLAVSCISLATKMMRTEYSATDVQAFLKLSDGGIIFETQTIQRMEALILGALQWRMRSITPFSFISFFITLFKLKDPPMGQVLKNRASEIIFKSQREIKLWEFKPSIIAVSALLCASHELFPFQYPCFLGTLSNCSYINKESVLQCYNVIQDIAIEEENESLLNAVSSSDTPVNVLNHHFLSSESEKTNGITVDASPLRQEKDLKRRTNEPEFSD* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01348 309 CDD CYCLIN_AtCycD-like_rpt2 153 244 - -
Rops3g01348 309 SUPERFAMILY Cyclin-like 12 150 IPR036915 -
Rops3g01348 309 PANTHER CYCLINS 30 252 IPR039361 -
Rops3g01348 309 Gene3D - 33 151 - -
Rops3g01348 309 SMART cyclin_7 51 144 IPR013763 -
Rops3g01348 309 FunFam D6-type cyclin 148 242 - -
Rops3g01348 309 MobiDBLite consensus disorder prediction 285 309 - -
Rops3g01348 309 Pfam Cyclin, N-terminal domain 25 150 IPR006671 -
Rops3g01348 309 SMART Cyclin_C_2 153 266 IPR004367 -
Rops3g01348 309 FunFam D6-type cyclin 33 147 - -
Rops3g01348 309 Pfam Cyclin, C-terminal domain 153 259 IPR004367 -
Rops3g01348 309 SUPERFAMILY Cyclin-like 135 253 IPR036915 -
Rops3g01348 309 Gene3D - 22 242 - -
Rops3g01348 309 MobiDBLite consensus disorder prediction 292 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01348 Rops-Chr3 19859378 19861504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01348 1 300 Core Cell Cycle Gene Families AT4G03270 43.631 1.60e-79 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01348 K18812 - gmx:100820404 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01348 3 19859378 19861504 Rops3g01348 3 19859378 19861504 ECH
Rops7g00911 7 12180961 12183201 Rops3g01348 3 19859378 19861504 PCT