Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01345 ATGGTAAGAGCTCCTTATTTTGATGAAAAAGGAATAAAGAAAGGTGCATGGAGTGAGGAAGAGGATAACAGACTTATATCTTACATTCAGAGATATGGCCATCCCAATTGGCGTCAACTCCCAAAGTTTGCAGGTTTGGCAAGATGTGGAAAAAGTTGCAGGCTTCGTTGGATGAATTATCTGAGGCCAAATCTAAAAAGAGGGAACTATACCCAGAAAGAAGAGAAAATAATCACGGAATTGCATAAAAAGCATGGAAACAAATGGTCTCTGATTGCTGAAAATCTACCTGGAAGAACTGACAATGAGATAAAGAACTATTGGCACAGCCACCTCAAGAAATTCTCAAAGCAGAATGAGATCACAACATCTGAAGATGATTTGAAGACCAAGCTTGATGAGCGTTCAGAATTTGAGAGTTCAACAAGTGAGGGTGTTTGTGCTGTTTCTTCGCACCCAATTTTGGAAAGTTCAATGTCCATGTCCTCAGAGACATCCTACACAGAACACTACTCTCCTTCTTCATTTTCCTCTAATAATATGGAATCAAATGTTAACTTGTCAAGGGAAGAAGAGAGCGTTGCTTCATGGGAAACATTGGATGGGTTCAGTAGCAATTTTTGGACTGAACCATTTATCTCAGAAAACGCATTTAGTCAGGATTATCACTTTCCCATTTCATGCTATGGAACACAGGGAGATGATCCATTTTTCCTTTGGTAG 723 0.3942 MVRAPYFDEKGIKKGAWSEEEDNRLISYIQRYGHPNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNYTQKEEKIITELHKKHGNKWSLIAENLPGRTDNEIKNYWHSHLKKFSKQNEITTSEDDLKTKLDERSEFESSTSEGVCAVSSHPILESSMSMSSETSYTEHYSPSSFSSNNMESNVNLSREEESVASWETLDGFSSNFWTEPFISENAFSQDYHFPISCYGTQGDDPFFLW* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01345 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops3g01345 240 FunFam MYB-related transcription factor 13 66 - -
Rops3g01345 240 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops3g01345 240 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops3g01345 240 CDD SANT 69 112 IPR001005 -
Rops3g01345 240 CDD SANT 16 61 IPR001005 -
Rops3g01345 240 Gene3D - 69 114 - -
Rops3g01345 240 SMART sant 13 63 IPR001005 -
Rops3g01345 240 SMART sant 66 114 IPR001005 -
Rops3g01345 240 Gene3D - 7 67 - -
Rops3g01345 240 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops3g01345 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops3g01345 240 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 192 - -
Rops3g01345 240 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops3g01345 240 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01345 Rops-Chr3 19721343 19722934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01345 1 114 MYB Transcription Factor Family AT5G16770 66.667 1.83e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g01345 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01345 K09422 - gmx:100781032 349.362