Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01344 ATGGTGAGAACTCCTTCCCATGACAAAAGTGGATTGAAGAAGGGTACTTGGACTGCAGAGGAAGATAGGAAGTTAATTGCTTATGTTACTAGATATGGTTGCTGGAATTGGCGCCAACTTCCCAGGTTTGCAGGTCTTGCAAGATGTGGGAAGAGTTGTAGATTGAGGTGGATGAATTATCTTAGGCCTAATATCAAAAGAGGAAACTTCACTCCAGAAGAAGAGGAATGCATCATGAGAATGCATGGAAAGCTAGGCAACAGATGGTCTGCCATTGCGGCTGAATTACCCGGAAGAACAGATAATGAAGTGAAGAATCATTGGCACACAACTCTCAAGAAGAGAGTTGAACAGAACACAGTCACAAATGAAAAAGCCAACAAAGCCTCCAAATCAAAAGACTCAGTGCCCAATAATCGTGTTGCTGATTTTCATGTTACTCCACCAGCTACTTCTCAGATCTCAGATAGAACTGGCCCATTATCCCCACTAGGCCCATTATCTCCACTATCATCCTCCAGTGACTTCTCTTCCATCAGTTCAGATCAAACCAGTAATGAAAAGTTTTTGCTTGAAGATGACTTTGGTTTTCTGGATGGAAACATAGAGCCCATGAATAATGGAAATTTCTGGACAGAGTCATTACTTGATGAAAACATTTCCAACACCCCAAGTGAAATAGTATCAAGCAATAATACTAATTGTTCTTTTCAAAATCCAGATACTACCCAGATCTTTGATGCTAGTGAATTGTCTCCACATCAATCATCCAGTGAGAGTTTGGGTATGGAGAATGACTTTGGAAGCTTTCTGGATGCATACACAGAGACAACAATTGATAGTTTTTGGGGACAGTCATATATGGCTGACGTGTCCCATGTTCCAAGTGAACTACTAACACCCTTTGCGGCTGAGTCTGAATATTATTCAACAGTATATGATGCAGATCTTTGGAGTCAAAGTAATTTGTATGATGAGTCTTTTAGCTTATTCTCATGA 999 0.4044 MVRTPSHDKSGLKKGTWTAEEDRKLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWMNYLRPNIKRGNFTPEEEECIMRMHGKLGNRWSAIAAELPGRTDNEVKNHWHTTLKKRVEQNTVTNEKANKASKSKDSVPNNRVADFHVTPPATSQISDRTGPLSPLGPLSPLSSSSDFSSISSDQTSNEKFLLEDDFGFLDGNIEPMNNGNFWTESLLDENISNTPSEIVSSNNTNCSFQNPDTTQIFDASELSPHQSSSESLGMENDFGSFLDAYTETTIDSFWGQSYMADVSHVPSELLTPFAAESEYYSTVYDADLWSQSNLYDESFSLFS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01344 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops3g01344 332 CDD SANT 69 112 IPR001005 -
Rops3g01344 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops3g01344 332 MobiDBLite consensus disorder prediction 116 131 - -
Rops3g01344 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops3g01344 332 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops3g01344 332 CDD SANT 16 61 IPR001005 -
Rops3g01344 332 SMART sant 13 63 IPR001005 -
Rops3g01344 332 SMART sant 66 114 IPR001005 -
Rops3g01344 332 MobiDBLite consensus disorder prediction 145 181 - -
Rops3g01344 332 MobiDBLite consensus disorder prediction 116 181 - -
Rops3g01344 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops3g01344 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops3g01344 332 Gene3D - 69 140 - -
Rops3g01344 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 230 - -
Rops3g01344 332 Gene3D - 6 67 - -
Rops3g01344 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops3g01344 332 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01344 Rops-Chr3 19623297 19624817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01344 1 137 MYB Transcription Factor Family AT1G06180 62.044 2.79e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g01344 Myb_DNA-binding 8.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01344 K09422 - gmx:100777107 400.979