Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01343 ATGAGAACCCCCTGCTATGACAAAAATGGAGTGAGGAAAGGAACATGGACACCAGAGGAAGACAAGAAGTTGTTTGATTATGTTACTAGGTATGGCCACTGGAATTGGCGCCTACTCCCCAAGTTTGCAGGGCTTACGAGATGCGGGAAGAGTTGCAGACTGAGGTGGCTGAATTACCTAAAACCAAACCTCAAAAGAGGGAACTACACTCAGGTAGAGGACGAAACTATTATCAAGCTTCACCAATGTCTGGGTAACAGATGGTCTGCCATTGCTGCTCAGATGCCAGGAAGAACGGACAATGAAATAAAAAACCATTGGCACACCAATCTCAAAAAGAGATTTCAAGATAACTCAGTCCAAAAAGCTCATGAGGTCTCCACTTCAAAGGACCACTCCCCAATTGAAACTGCAAACGACATAAATGGTCCTTTCCAAAGCTTTCATTCCACCCAATTAGTCAATTCTTGCCAATTTTCCCAGCATTCATCATCCTCGACCGAATCCTCCACAAGTACAGAGCATACGGCTGTTACCAGCAATGAAAATCTTGTTCAGAAAGATGAATTTGCCTTTCTGAATGACGACACATATCCTATGAGTGGAAACTTCTGGGCTTACGAGATGCGGGAAGAGTTGCAGACTGAGGTGGCTGAATTACCTAAAACCAAACCTCAAAAGAGGGAACTACACTCAGGAAGAGGACGAAACTATTATCAAGCTTCACCAATGTCTGGATGGTCTGCCATTGCTGCCCAGATGCCAGGAAGAACTGACAATGAAATAAAAAACCATTGGCACACCAACCTCAAGAAGCGATTTCAACATGACTCAGTTCCAAAAGCTCACGAGGTCTCGAAGTCAAAGGACCACTCACCAGTTGAAACTGGAAACAACATAAGTGGTCCTTTTCAAAGGCTTCATACCACCCAATTTGCCGATTCTTGCCCTTGTTCCCAGCATTCATCATCCTTGACCGAATCCTCATCCACAAGTACAGAGCACATGGCTGTTACCAACAATGAAAATCTGGTTCTGGAAGATGAATTTGCCTTTCTGAATGATGACATATATCCTATGAGTGGAAACCTCTGGTTAGAGCCATGTGTGCTTGATATTTCCTATGTACCAAGTGAACCTGAAGATTTTAGCACAGTCTTTGACGCAGAACTTTGGTGTCATGGTGACTAA 1191 0.4383 MRTPCYDKNGVRKGTWTPEEDKKLFDYVTRYGHWNWRLLPKFAGLTRCGKSCRLRWLNYLKPNLKRGNYTQVEDETIIKLHQCLGNRWSAIAAQMPGRTDNEIKNHWHTNLKKRFQDNSVQKAHEVSTSKDHSPIETANDINGPFQSFHSTQLVNSCQFSQHSSSSTESSTSTEHTAVTSNENLVQKDEFAFLNDDTYPMSGNFWAYEMREELQTEVAELPKTKPQKRELHSGRGRNYYQASPMSGWSAIAAQMPGRTDNEIKNHWHTNLKKRFQHDSVPKAHEVSKSKDHSPVETGNNISGPFQRLHTTQFADSCPCSQHSSSLTESSSTSTEHMAVTNNENLVLEDEFAFLNDDIYPMSGNLWLEPCVLDISYVPSEPEDFSTVFDAELWCHGD* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01343 396 Gene3D - 13 65 - -
Rops3g01343 396 MobiDBLite consensus disorder prediction 273 296 - -
Rops3g01343 396 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops3g01343 396 MobiDBLite consensus disorder prediction 273 291 - -
Rops3g01343 396 MobiDBLite consensus disorder prediction 159 179 - -
Rops3g01343 396 CDD SANT 68 111 IPR001005 -
Rops3g01343 396 ProSiteProfiles Myb-like domain profile. 205 270 IPR001005 -
Rops3g01343 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Rops3g01343 396 CDD SANT 15 60 IPR001005 -
Rops3g01343 396 FunFam MYB-related transcription factor 12 65 - -
Rops3g01343 396 SMART sant 65 113 IPR001005 -
Rops3g01343 396 SMART sant 12 62 IPR001005 -
Rops3g01343 396 SMART sant 201 272 IPR001005 -
Rops3g01343 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Rops3g01343 396 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Rops3g01343 396 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 247 337 - -
Rops3g01343 396 CDD SANT 247 270 IPR001005 -
Rops3g01343 396 Gene3D - 203 296 - -
Rops3g01343 396 Gene3D - 68 139 - -
Rops3g01343 396 Pfam Myb-like DNA-binding domain 247 269 IPR001005 -
Rops3g01343 396 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Rops3g01343 396 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Rops3g01343 396 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Rops3g01343 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 274 IPR017930 -
Rops3g01343 396 SUPERFAMILY Homeodomain-like 239 278 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01343 Rops-Chr3 19570561 19574956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01343 247 358 MYB Transcription Factor Family AT2G31180 34.513 3.83e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g01343 Myb_DNA-binding 3.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01343 K09422 - gmx:100777621 274.248