Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01342 ATGTATTTGTCGTTTATGGTTTTGGCACAATTCACAGAGATGACAAGCAGATATGCACAAGAAATGCAAGCAATTGACGAGCTATTGAAACAAAGAAATGAAATACATGCATCATACACTGTTGCTCCTTTAAAACGGAGTACCAGTAGGAGCAGAAATAAAAGTTCTTCGAAGGAGGCAAAAGAAGATGGCCAAGCAAGGGAGAAGAGGAGGAGATCGGCCAAAGAGGAAGAAATGACATCACTTCCTGTTGAGGAAATCACCGAAGCCTTGGCAAAGAAGGGATATGATGTTATGATATCAGATGATGCAGGGAGGCTTGGAGGAGTCACAAGAGTAGATCCACAAGATCAGGATGTCAAGAATCTCAAGAAAGTTTGCATCGTCCTAGTTCGTGGTGCCAAGGACAAGCGTCTCAAGGTCAAGGGACCTGTTAGGATGCCAACTAAAGTTCTTAACATCACCACCAGGAAATCCCCCTGTGGAGAAGATTTTCTTGTGGATGCCTTGGACTATGCTATATCAAAGTTCTGA 534 0.4307 MYLSFMVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTVAPLKRSTSRSRNKSSSKEAKEDGQAREKRRRSAKEEEMTSLPVEEITEALAKKGYDVMISDDAGRLGGVTRVDPQDQDVKNLKKVCIVLVRGAKDKRLKVKGPVRMPTKVLNITTRKSPCGEDFLVDALDYAISKF* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01342 177 Gene3D - 13 107 IPR036440 -
Rops3g01342 177 Pfam Ribosomal protein S10p/S20e 119 163 IPR027486 -
Rops3g01342 177 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 50 163 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g01342 177 MobiDBLite consensus disorder prediction 40 83 - -
Rops3g01342 177 ProSitePatterns Ribosomal protein S10 signature. 134 149 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops3g01342 177 Gene3D Ribosomal protein S10 domain 111 166 IPR036838 -
Rops3g01342 177 SUPERFAMILY Ribosomal protein S10 118 164 IPR036838 -
Rops3g01342 177 MobiDBLite consensus disorder prediction 52 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01342 Rops-Chr3 19483563 19491989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01342 112 163 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 75.000 1.36e-21 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01342 K02969 - gmx:100800929 90.8929