Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01341 ATGAGAACCCCCTGCTATGACAAAAATGGAGTGAAGAAAGGAACATGGACACCTGAGGAAGACAAGAAGTTGTTTGATTATGTTACTAGGTATGGCCACTGGAATTGGCGCCTACTACCCAAGTTTGCAGGACTTGCGAGATGCGGGAAGAGTTGTAGACTTAGGTGGCTGAATTACCTAAGACCAAATCTCAAAAGAGGGGACTATACTCTCGAAGAGGAGGAAACTATAATCAACCTGCACCAACTTCTGGGTAACAGATGGTCTGCCATTGCTGCTCAGATGCCAGGAAGAACGGACAATGAAATAAAAAACCATTGGCACACCAATCTCAGAAAGAGATTTCAAGATAACTCAGTCAAAAAAGCTCATGAGGTCTCCACTTCAAAGGACCACTCCCCAATTGAAACTTCAAACAACATAAATGGTCCTTTCCAAAGCTTTCATTCCACCCAATTAGCCAATTCTTGCCAATTTTCCCAGCATTCATCATCCTCGACCGAATCCTCCACAAGTACAGAGCATACGGCTGTTACCAGCAATGAAAATCTTGTTCAGAAAGATGAATTTGCCTTTCTGAATGACGACACATATCCTATGAGTGGAAACTTTTGGTTAGAGTCATATATGCCTGACATTTCTTACATCCCAAGTGAACATGAAGATTTTAGCGCAATCTTTGATGCAGAACTTTGGTGTCATGATGACTAA 711 0.4205 MRTPCYDKNGVKKGTWTPEEDKKLFDYVTRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGDYTLEEEETIINLHQLLGNRWSAIAAQMPGRTDNEIKNHWHTNLRKRFQDNSVKKAHEVSTSKDHSPIETSNNINGPFQSFHSTQLANSCQFSQHSSSSTESSTSTEHTAVTSNENLVQKDEFAFLNDDTYPMSGNFWLESYMPDISYIPSEHEDFSAIFDAELWCHDD* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01341 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Rops3g01341 236 MobiDBLite consensus disorder prediction 159 181 - -
Rops3g01341 236 MobiDBLite consensus disorder prediction 118 144 - -
Rops3g01341 236 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops3g01341 236 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Rops3g01341 236 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 179 - -
Rops3g01341 236 Gene3D - 68 140 - -
Rops3g01341 236 CDD SANT 15 60 IPR001005 -
Rops3g01341 236 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Rops3g01341 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Rops3g01341 236 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Rops3g01341 236 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Rops3g01341 236 FunFam MYB-related transcription factor 12 65 - -
Rops3g01341 236 CDD SANT 69 111 IPR001005 -
Rops3g01341 236 Gene3D - 12 65 - -
Rops3g01341 236 SMART sant 65 113 IPR001005 -
Rops3g01341 236 SMART sant 12 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01341 Rops-Chr3 19438204 19439995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01341 2 198 MYB Transcription Factor Family AT2G31180 48.990 1.11e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g01341 Myb_DNA-binding 8.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01341 K09422 - gmx:100777621 308.916