Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01340 ATGTGGAATGACAATACTCAAAGCTTTCCTTTCACTAGCAGATGGTTTGCCATTGCTGCTCAGATGCCAAGAAGAACCGATAATGAAATAAAGAACTACTGGCACACCAACCTCAAGAAGCGATTGCAACATAACTTAGTCACTAAAGCTCATGAGGTCTCTAACTCAAAGGACCACTCCCCAGTTGAAATCGCGAACAACATAAATGGTCCTTCACAAGGCCTTCATAGCATCCAATTATCCAATTCTTGCCTATGTTCCCATCATAATTCATCATCCTTGACCCAATCCTCAACAAGTATAGAGCATACTGCTGTTATCAGTGAAGAAAATCTAGATATGGAAGATGACTTTGGCTTTCTGAATGCAAAAGCATATCCTATGAGTGGAGAGCGATTGCAACATAACTCAGTCGCTAAAGCTCATGAGGTCTCTAACTCAAAGGACCATTCCCCAGTTGAAAATACGAACAACATAAATGGTCCTTCACAAGGCCTTCATAACACCCAATTATCCAATTCTTGCCTATTTCCCCATCATTATTCATCATCCTCGACTGAATCCTCAACAAGTACAAACCATACTGCTATTATCAGTGATGAAAATCTGGATATGGAAGATGAGTTTGCCTTTTTGAATGCAGACGCATATCCAATGAGTGGAGACTTCTGGTTAGAGCCATATATGGTTGACTATTCTTATGTTCGAAGTGAAGTTAATGATTTCAGTGCTACCTTTGGTGTACTTTGGCGTCATGATAACTAA 765 0.4 MWNDNTQSFPFTSRWFAIAAQMPRRTDNEIKNYWHTNLKKRLQHNLVTKAHEVSNSKDHSPVEIANNINGPSQGLHSIQLSNSCLCSHHNSSSLTQSSTSIEHTAVISEENLDMEDDFGFLNAKAYPMSGERLQHNSVAKAHEVSNSKDHSPVENTNNINGPSQGLHNTQLSNSCLFPHHYSSSSTESSTSTNHTAIISDENLDMEDEFAFLNADAYPMSGDFWLEPYMVDYSYVRSEVNDFSATFGVLWRHDN* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01340 254 CDD SANT 14 38 IPR001005 -
Rops3g01340 254 SUPERFAMILY Homeodomain-like 12 45 IPR009057 -
Rops3g01340 254 MobiDBLite consensus disorder prediction 150 165 - -
Rops3g01340 254 Gene3D - 6 65 - -
Rops3g01340 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 42 IPR017930 -
Rops3g01340 254 MobiDBLite consensus disorder prediction 139 165 - -
Rops3g01340 254 PANTHER MYB DOMAIN PROTEIN 55 12 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01340 Rops-Chr3 19381940 19382704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01340 14 113 MYB Transcription Factor Family AT3G23250 39.048 1.22e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops3g01340 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01340 K09422 - gmx:102666009 93.2041