Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops3g01340 | ATGTGGAATGACAATACTCAAAGCTTTCCTTTCACTAGCAGATGGTTTGCCATTGCTGCTCAGATGCCAAGAAGAACCGATAATGAAATAAAGAACTACTGGCACACCAACCTCAAGAAGCGATTGCAACATAACTTAGTCACTAAAGCTCATGAGGTCTCTAACTCAAAGGACCACTCCCCAGTTGAAATCGCGAACAACATAAATGGTCCTTCACAAGGCCTTCATAGCATCCAATTATCCAATTCTTGCCTATGTTCCCATCATAATTCATCATCCTTGACCCAATCCTCAACAAGTATAGAGCATACTGCTGTTATCAGTGAAGAAAATCTAGATATGGAAGATGACTTTGGCTTTCTGAATGCAAAAGCATATCCTATGAGTGGAGAGCGATTGCAACATAACTCAGTCGCTAAAGCTCATGAGGTCTCTAACTCAAAGGACCATTCCCCAGTTGAAAATACGAACAACATAAATGGTCCTTCACAAGGCCTTCATAACACCCAATTATCCAATTCTTGCCTATTTCCCCATCATTATTCATCATCCTCGACTGAATCCTCAACAAGTACAAACCATACTGCTATTATCAGTGATGAAAATCTGGATATGGAAGATGAGTTTGCCTTTTTGAATGCAGACGCATATCCAATGAGTGGAGACTTCTGGTTAGAGCCATATATGGTTGACTATTCTTATGTTCGAAGTGAAGTTAATGATTTCAGTGCTACCTTTGGTGTACTTTGGCGTCATGATAACTAA | 765 | 0.4 | MWNDNTQSFPFTSRWFAIAAQMPRRTDNEIKNYWHTNLKKRLQHNLVTKAHEVSNSKDHSPVEIANNINGPSQGLHSIQLSNSCLCSHHNSSSLTQSSTSIEHTAVISEENLDMEDDFGFLNAKAYPMSGERLQHNSVAKAHEVSNSKDHSPVENTNNINGPSQGLHNTQLSNSCLFPHHYSSSSTESSTSTNHTAIISDENLDMEDEFAFLNADAYPMSGDFWLEPYMVDYSYVRSEVNDFSATFGVLWRHDN* | 255 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops3g01340 | 254 | CDD | SANT | 14 | 38 | IPR001005 | - | |
Rops3g01340 | 254 | SUPERFAMILY | Homeodomain-like | 12 | 45 | IPR009057 | - | |
Rops3g01340 | 254 | MobiDBLite | consensus disorder prediction | 150 | 165 | - | - | |
Rops3g01340 | 254 | Gene3D | - | 6 | 65 | - | - | |
Rops3g01340 | 254 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 14 | 42 | IPR017930 | - | |
Rops3g01340 | 254 | MobiDBLite | consensus disorder prediction | 139 | 165 | - | - | |
Rops3g01340 | 254 | PANTHER | MYB DOMAIN PROTEIN 55 | 12 | 192 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops3g01340 | Rops-Chr3 | 19381940 | 19382704 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops3g01340 | 14 | 113 | MYB Transcription Factor Family | AT3G23250 | 39.048 | 1.22e-11 | 60.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Rops3g01340 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops3g01340 | K09422 | - | gmx:102666009 | 93.2041 |