Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01335 ATGACGAGGAGAACCCCTTGTTGTGACAAACATGGAGTGAAGAAGGGAACATGGACACCAGAGGAAGACAAGAAGTTGTTTGATTATGTGACTAGGTATGGCCACTGGAATTGGCGCCTACTCCCCAAGTTTGCAGGGCTTACGAGATGCGGGAAGAGTTGCAGACTGAGGTGGCTGAATTACCTAAAACCAAACCTCAAAAGAGGGAACTACACTCAGGAAGAGGACGAAGCTATTATCAAGCTTCACCAATGTCTGGGTAACAGATGGTCTGCCATTGCTGCTCAGATGCCAGGAAGAACGGACAATGAAATAAAAAACCATTGGCACACCAATCTCAAAAAGAGATTTCAAGATAACTCAGTCCAAAAAGCTCATGAGGTCTCCACTTCAAAGGACCACTCCCCAATTGAAACTTCAAACGACATAAATGGTCCTTTCCAAAGCTTTCATTCCACCCAATTAGTCAATTCTTGCCAATTTTCCCAGCATTCATCATCCTCGACCGAATCCTCCACAAGTACAGAGCATACGGCTGTTACCAGCAATGAAAATCTTGTTCAGAAAGATGAATTTGCCTTTCTGAATGACGACACATATCCTATGAGTGGAAACTTCTGGTTAGAGCCATATATGCCTGACATTTCTTATACCCCAAGTGAACATGAAGATTTTAGCGCAATCTTTGATGTAGAACTTTGGAGTCATGATGACTAA 717 0.431 MTRRTPCCDKHGVKKGTWTPEEDKKLFDYVTRYGHWNWRLLPKFAGLTRCGKSCRLRWLNYLKPNLKRGNYTQEEDEAIIKLHQCLGNRWSAIAAQMPGRTDNEIKNHWHTNLKKRFQDNSVQKAHEVSTSKDHSPIETSNDINGPFQSFHSTQLVNSCQFSQHSSSSTESSTSTEHTAVTSNENLVQKDEFAFLNDDTYPMSGNFWLEPYMPDISYTPSEHEDFSAIFDVELWSHDD* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01335 238 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 185 - -
Rops3g01335 238 FunFam Transcription factor RAX3 8 68 - -
Rops3g01335 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Rops3g01335 238 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Rops3g01335 238 SMART sant 14 64 IPR001005 -
Rops3g01335 238 SMART sant 67 115 IPR001005 -
Rops3g01335 238 MobiDBLite consensus disorder prediction 161 182 - -
Rops3g01335 238 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Rops3g01335 238 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Rops3g01335 238 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops3g01335 238 Gene3D - 14 67 - -
Rops3g01335 238 Gene3D - 70 142 - -
Rops3g01335 238 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Rops3g01335 238 CDD SANT 70 113 IPR001005 -
Rops3g01335 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops3g01335 238 CDD SANT 17 62 IPR001005 -
Rops3g01335 238 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01335 Rops-Chr3 19301266 19302985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01335 4 200 MYB Transcription Factor Family AT2G31180 48.990 2.61e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g01335 Myb_DNA-binding 9.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01335 K09422 - gmx:100778518 317.775