Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01334 ATGAGAACCCCCTGCTATGACAAAAATGGAGTGAAGAAAGGAACATGGACACCAGAGGAAGACAAGAAGTTGTTTGATTATGTTACTAGGTATGGCCACTGGAATTGGCGCCTACTCCCCAAGTTTGCAGGACTTGCGAGATGCGGGAAGAGTTGTAGACTTAGGTGGCTGAATTACCTAAGGCCAAATCTCAAAAGAGGGGACTACACTCTCGAAGAGGAGGAAACTATAATCAACCTGCACCAACTTCTGGGTAACAGATGGTCTGCCATTGCTGCTCAGATGCCAGGAAGAACGGACAATGAAATAAAAAACCATTGGCACACCAATCTCAAAAAGAGATTTCAAGATAACTCAGTCCAAAAAGCTCATGAGGTCTCCACTTCAAAGGACCACTCCCCAATTGAAACTGCAAACGACATAAATGGTCCTTTCCAAAGCTTTCATTCCACCCAATTAGTCAATTCTTGCCAATTTTCCCAGCATTCATCATCCTCGACCGAATCCTCCACAAGTACAGAGCATACGGCTGTTACCAGCAATGAAAATCGTGTTCAGAAAGATGAATTTGCCTTTCTGAATGACGACACATATCCTATGAGTGGAAACTTCTGGTTAGAGTCATATATGCCTGACATTTCTTACATCCCAAGTGAACATGAAGATTTTAGCGCAATCTTTGATGCAGAACTTTGGTGTCATGATGACTAA 711 0.429 MRTPCYDKNGVKKGTWTPEEDKKLFDYVTRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGDYTLEEEETIINLHQLLGNRWSAIAAQMPGRTDNEIKNHWHTNLKKRFQDNSVQKAHEVSTSKDHSPIETANDINGPFQSFHSTQLVNSCQFSQHSSSSTESSTSTEHTAVTSNENRVQKDEFAFLNDDTYPMSGNFWLESYMPDISYIPSEHEDFSAIFDAELWCHDD* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01334 236 Gene3D - 67 140 - -
Rops3g01334 236 Gene3D - 12 65 - -
Rops3g01334 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Rops3g01334 236 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Rops3g01334 236 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops3g01334 236 SMART sant 65 113 IPR001005 -
Rops3g01334 236 SMART sant 12 62 IPR001005 -
Rops3g01334 236 CDD SANT 15 60 IPR001005 -
Rops3g01334 236 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Rops3g01334 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Rops3g01334 236 FunFam MYB-related transcription factor 12 65 - -
Rops3g01334 236 CDD SANT 69 111 IPR001005 -
Rops3g01334 236 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 186 - -
Rops3g01334 236 MobiDBLite consensus disorder prediction 159 182 - -
Rops3g01334 236 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Rops3g01334 236 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01334 Rops-Chr3 19275902 19278421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01334 2 205 MYB Transcription Factor Family AT2G31180 50.732 1.89e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g01334 Myb_DNA-binding 8.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01334 K09422 - gmx:100778518 307.76