Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01322 ATGAAGAAGTGCGAACTGTGTAAGATTCCTGCTAGAACCTTCTGTGAATCGGATCAAGCGAGTTTGTGTTGGAACTGTGACGCTAAGGTTCATGGTGCCAACTTCTTGGTTGCAAGGCACTCGAGGACGCTTCTATGCCATTCTTGCCGTTCTCCGACGCCGTGGAAAGCCTCCGGCGCAAGGCTCGGCAACACTGTCTCCGTTTGTCAGCGTTGCGCCGCCGGAACCAGCGGAGAAGGAGGAGGAGAAGAAGAAGAAGAAGAGAGTGAAGGAGGCAATGAAGAAGAGATAGAAACTGAGGATGATGATGTTGACGGCAACGTTGTCGACGAGGACGGAGAAAATCAGGTAGTGCCGTGGTCCTCGACGCCGCCTCCACCGGCGGCGAGTTCTTCAAGCAGTGAATGGTCGTCGGTTAGTAGGTGCAACCACAATAGAAGCAACGGTTATGGAGATGTGTCTGTTTCTGAATCCGAAACGACAACGGCCTCGTTGAAACGACAGCGTGAGGATGATGCTGCTTCCGATCGTGATCTCCAGGAGGGTCCGAAGAATGGTTCGCCATCTCAACGGAGGCGCGGTGGGCAATGGAATGACGAGGTGGCGTATGGCGGAGAATCACCGTCGAAGTAG 633 0.5387 MKKCELCKIPARTFCESDQASLCWNCDAKVHGANFLVARHSRTLLCHSCRSPTPWKASGARLGNTVSVCQRCAAGTSGEGGGEEEEEESEGGNEEEIETEDDDVDGNVVDEDGENQVVPWSSTPPPPAASSSSSEWSSVSRCNHNRSNGYGDVSVSESETTTASLKRQREDDAASDRDLQEGPKNGSPSQRRRGGQWNDEVAYGGESPSK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01322 210 MobiDBLite consensus disorder prediction 74 210 - -
Rops3g01322 210 CDD Bbox1_BBX-like 3 45 - -
Rops3g01322 210 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 188 - -
Rops3g01322 210 MobiDBLite consensus disorder prediction 127 162 - -
Rops3g01322 210 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Rops3g01322 210 MobiDBLite consensus disorder prediction 163 179 - -
Rops3g01322 210 SMART bboxneu5 1 45 IPR000315 GO:0008270
Rops3g01322 210 MobiDBLite consensus disorder prediction 80 110 - -
Rops3g01322 210 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01322 Rops-Chr3 19098780 19100308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01322 2 104 C2C2-CO-like Transcription Factor Family AT4G27310 57.547 1.29e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops3g01322 zf-B_box 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01322 - - vun:114168631 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01322 3 19098780 19100308 Rops3g01322 3 19098780 19100308 ECH
Rops7g00906 7 12108038 12109330 Rops3g01322 3 19098780 19100308 PCT