Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01316 ATGCCTCTACTGTGCTCCAAAGCTATTTTTCTGATACTAAACCAGATTCCATTGCTCCTACTTTGTGCTGTTTTTGTTGTTTTATTTTTACACCCGTTACACAAACAATTAAGAATGAACAGGCATCATGTCGTCCCATCTAGTAACATTAGAATTATTGTTCTATGTACTTTGTTTCTATGCTTTTCTCCACTGTGTTTAGCAGCAGATACTTTGAACGCTGGCCAGAAGTTAATAGGCAATGGAACTGTCCTTGTTTCAGCTGGAAAAAAATTTGAACTTGGTTTCTTTTCTCCTGTTAGTGTCACTGGCGGTAAAGGAAGATACTTAGGGGTATGGTATCACCTGCAAGAGAGTTCAGAACCTCTAACAGTGGTGTGGGTTGCCAACAGAGATTGCCCTTTACCTGTTGATTCTACTGGAGTTTTTCAAATTGCAGATGATGGGGATCTGGTAGTAGAAGACACATCTGGTAAAAGCTATTGGTCAACCAAACTCAAAGACTCTTCATTATCCACAAACAGGACAGTGAAACTCATGGATTCTGGGAACCTAGTGTTACTAGATGAACATGTGGGAATGAAACTTTGGGAGAGTTTTGAACTCCCAACTGACACTTTCCTACCAGGCATGAAGATGGATAGGAATTTGGAATTGACCAGTTGGAAAAGCCCACAAGATCCAGGAAGTGGGAACTTCACTTTTAAGATGGAACCAAAAAGTGGCAACCGTTTCATCATCTTAAACCAAGACCAAATTTACTGGGAGAGTGAAGAACAAGGGATTATAAATTCAGAAGAAAATTCTGATGACATGAGCACTGAAGTTTACAACTTGTTGACCAACTTTACCGTGATTCCACGTAGGAACATAACGAGCTACAAGAACACAAGGCTGCTCCTCAATTCTTCAGGCCGGATACAATTTCTGATGAGGAATGATTTCGGAGACGAGTTCGTTCCGTGGCAGCAGCCAAGAACATATTGCTTGAAATATAACAGTTGTGGGAACTTTGCCAGTTGCAATGACAATGATAAGGTATGCAGATGTTTGCCTGGATTCTTAGATCCTCAAAATGATTACATGGGAGAGGGAGATTCTTCTTCTCTATCATGTACGAGAAGAAAATCAGCACCATGTGGAAAAGACGCAACTTTCTTAAACTTGGCCATGATGAAAATAGGAAGTCCTGATAGAAAAGTCATAGCAGAAAATGAAACAGAATGCCAATCAAAATGCCTTGAGATGTGCCCCGTTTGCCAGGCTTATTCATATGCGACACCTACACTGCAGCGTGTTCTTAATCCCTCCACTTGTTGGATCTGGACAAACAATTTAACTACTCTTAAAGAAGAGTACCTTGATGGCCATGGTCGTATACTCTCTGTCCTTGTTGACAAATCAGACATAGCACAAACTCCAAAAACTTGTGAACCTTGTGGCACAAACATAGTCCCTTATCCACTGAGCACTGGACCCAGTTGCGGAGACCCTGCTTACTCCAATTTCAACTGCAACAGCTCAACATATCAACTTAGCTTCGTCACGAACAGTTACCGAGTTACTAGAATAGATCCAGGTTCAAGGAGGTTCTTCATCCGGGTCGTTCAGAAAGAGGATAATTCGTTTAATCGTTACTGTGGTGAAGGAACTCGACACAATGACAATCTGAATGTTTCTTCACCATTTATTAAGACCAACAACGACCAGTGCTCTGATCGAGTAGAAGTTAGTTGGCAACCACCATCCGAACCCACCTGTGCTAAGCCCAGTGATTGCGACGGTTGGAAACATTCAACTTGCAAAGGAAAAAGGTGTCTTTGCAATGCAAATTATTACTGGCATGGCGATATTTTAAGTTGTACAGATAAAGCTATATCCCCTTCTAAACCTACTTTAGAAGAGGCAAAAGGAAAAGGAAACTCCAAAAGCTCACTGTCTTTGATTCTTGGCATAACTCTTCCAGGCGTGGTTATTCTGGCATGCATAATTATTTTCGCTTATGTATGCAGAAGGAAAATAGCTCTTAAGCTTAAGCAAGACAAGGAAAGCATACAGAGAAATAGAGGGCGCTTTTATGACAGTGAAAGACATGTGAAAGATTTGATAGACATGGAGGGATTGGAAGAAAATGACAATGAAGGCATAGAGGTCCCTTATTTTGATTTTGAGAGCATACTAGTAGCTACAGATCATTTCTCAAATGCAAATATGCTTGGTAAAGGAGGTTATGGGCCAGTTTACAAGGGCAAGCTTCCAGGTGGTCAAGATATTGCTGTAAAGAGACTTTCAAGTGTTTCATCACAAGGCTTACAGGAATTCAAGAATGAGGTTGTTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTCAGGGGCTATTGCATCAAAGGAGATGAAAAAATTTTACTTTATGAATATATGCCTAACAAGAGCTTAGATTCATTTATATTCGATCCGACAAAAAGTGTGCTTTTGGATTGGCAAATGCGGTTTGATATAATTCTTGGAATTGCTCGTGGGCTACTTTATCTTCACCAAGACTCAAGATTGAGAGTAATTCACAGAGATTTGAAAACCAGTAACATTCTTCTAGATGGGGAAATGCAACCTAAAATTTCAGACTTTGGATTAGCAAGAATATTTGGGGGCAAAGAGACTGAGGCTAGCACCGAGAGGGTGGTGGGGACTTGTGGATACATGTCTCCTGAATATGCATTGGATGGACATTTCTCAACCAAATCAGATGTTTTCAGCTTTGGTGTACTCTTGCTTGAGATTATCAGTGGGAAAAAGAATACAGGATTTTATCAACATAAAGAAATTTCAAGCCTTTTGGGTTATGGCTGGAAACTATGGAAAGAGAACAAGTTGCTGGAATTAATGGACACAACTCTGCGTGAAGCTTGCAATGCAAACCAATTCATTAGGTGTGCGCATATTGGACTGTTGTGTGTCCAAGATGAACCAGATGATCGACCAAACATGTCAAATGTTGTGATCATGCTTGACAGTGAAACTGCAAGCCTTCCAACCCCTAAAGAACCGACCTTTTTCACGCGTAAAGAGCTATCTAGTACAGTGTTACGCATGGAACACACTTAA 3108 0.4057 MPLLCSKAIFLILNQIPLLLLCAVFVVLFLHPLHKQLRMNRHHVVPSSNIRIIVLCTLFLCFSPLCLAADTLNAGQKLIGNGTVLVSAGKKFELGFFSPVSVTGGKGRYLGVWYHLQESSEPLTVVWVANRDCPLPVDSTGVFQIADDGDLVVEDTSGKSYWSTKLKDSSLSTNRTVKLMDSGNLVLLDEHVGMKLWESFELPTDTFLPGMKMDRNLELTSWKSPQDPGSGNFTFKMEPKSGNRFIILNQDQIYWESEEQGIINSEENSDDMSTEVYNLLTNFTVIPRRNITSYKNTRLLLNSSGRIQFLMRNDFGDEFVPWQQPRTYCLKYNSCGNFASCNDNDKVCRCLPGFLDPQNDYMGEGDSSSLSCTRRKSAPCGKDATFLNLAMMKIGSPDRKVIAENETECQSKCLEMCPVCQAYSYATPTLQRVLNPSTCWIWTNNLTTLKEEYLDGHGRILSVLVDKSDIAQTPKTCEPCGTNIVPYPLSTGPSCGDPAYSNFNCNSSTYQLSFVTNSYRVTRIDPGSRRFFIRVVQKEDNSFNRYCGEGTRHNDNLNVSSPFIKTNNDQCSDRVEVSWQPPSEPTCAKPSDCDGWKHSTCKGKRCLCNANYYWHGDILSCTDKAISPSKPTLEEAKGKGNSKSSLSLILGITLPGVVILACIIIFAYVCRRKIALKLKQDKESIQRNRGRFYDSERHVKDLIDMEGLEENDNEGIEVPYFDFESILVATDHFSNANMLGKGGYGPVYKGKLPGGQDIAVKRLSSVSSQGLQEFKNEVVLIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDPTKSVLLDWQMRFDIILGIARGLLYLHQDSRLRVIHRDLKTSNILLDGEMQPKISDFGLARIFGGKETEASTERVVGTCGYMSPEYALDGHFSTKSDVFSFGVLLLEIISGKKNTGFYQHKEISSLLGYGWKLWKENKLLELMDTTLREACNANQFIRCAHIGLLCVQDEPDDRPNMSNVVIMLDSETASLPTPKEPTFFTRKELSSTVLRMEHT* 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01316 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 854 866 IPR008271 GO:0004672|GO:0006468
Rops3g01316 1035 Gene3D Transferase(Phosphotransferase) domain 1 809 1015 - -
Rops3g01316 1035 SMART blect_4 76 203 IPR001480 -
Rops3g01316 1035 ProSiteProfiles Protein kinase domain profile. 733 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01316 1035 Gene3D Phosphorylase Kinase; domain 1 699 808 - -
Rops3g01316 1035 Pfam D-mannose binding lectin 124 218 IPR001480 -
Rops3g01316 1035 FunFam Putative G-type lectin S-receptor-like serine/threonine-protein kinase 695 808 - -
Rops3g01316 1035 Pfam S-locus glycoprotein domain 291 354 IPR000858 GO:0048544
Rops3g01316 1035 SUPERFAMILY alpha-D-mannose-specific plant lectins 124 258 IPR036426 -
Rops3g01316 1035 Gene3D - 65 201 IPR036426 -
Rops3g01316 1035 Pfam Protein tyrosine and serine/threonine kinase 736 1002 IPR001245 GO:0004672|GO:0006468
Rops3g01316 1035 ProSiteProfiles PAN/Apple domain profile. 380 465 IPR003609 -
Rops3g01316 1035 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 809 1012 - -
Rops3g01316 1035 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 175 1021 - -
Rops3g01316 1035 CDD STKc_IRAK 739 1005 - -
Rops3g01316 1035 ProSiteProfiles Bulb-type lectin domain profile. 69 200 IPR001480 -
Rops3g01316 1035 SUPERFAMILY Protein kinase-like (PK-like) 715 1021 IPR011009 -
Rops3g01316 1035 Pfam PAN-like domain 380 447 IPR003609 -
Rops3g01316 1035 CDD B_lectin 78 203 IPR001480 -
Rops3g01316 1035 SMART serkin_6 733 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01316 Rops-Chr3 19033048 19037935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01316 629 1022 Receptor kinase-like Gene Family AT4G05200 49.239 1.28e-125 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01316 PK_Tyr_Ser-Thr 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01316 - - tpra:123882048 1272.3