Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01311 ATGGAGCACCTTATATTTCTTGCGGAGGTGCCACTCAATCCCGAGGCCAACAAGGAGAAGGTGACCCAAGTTACGTTCGAGACTTTCAATGTGCCTGCCATGTATGTTGCGGTTCAGGCTGTCTTGTCTCTGTATGCCAATGGACGCACTACAGGAGTTTTGAGAAGTTCCCTAGAAAGCAAAGATATATTGGGAGATGGTTATGAAAGTGATGTTCTTGGGGAGTCCACGCCAGATGCTGTAATCAGTGGGTTTATGAAAGGTGAGAAAGAGCTTATTGAGGAGTTGTTGCAAACTGAAATAAATATGTCCCGCTGGGAGTGCTCTCATGCAGCATATGGAGGATTTCTAGAGAATCCCCCACCGACCCCATCAGCCGTCACCACAGTGAGCCCACCCGCACCAGCACCAGTTGCAGCCGCAGCAACCTTCAGTGTGAATGCTCCTAACTTCATGGCCAAGGATGTTGGGTTTGAGAACACAGCAGGAGCTGAGAAGCACCAAGCCGTTGCACTTAGCGTAACTGCAGATCAAGCCGTGTTTTTCAACTTTGGAGTTTTCCAGAACCGCGAGCTGATTGTGAAGGAACCCATGGAGAATCAACAATGCATGGTGACAGGGCCAAAGCCTACAGCCCTAGTGCACTTGTGTTCCGGAGTTGCCACTTCGCAGGGGAACCCTCTTGAACCCCAAGGGGGATACATGCCCTGGATAGGAAGTACTTTCAAGGAAACATGCACCTATTATGAATACAACAACAAGAGACCTGGTGCTAACACTGTTGCTAGAGTCACATGGCCAGGTGTTAAAACCGTAACACCTTTTGAGGCTGCTGATTATTATCCAGGGAGGTCTTATGGACTCGCTAATTCGACTCAACGTGATGCTTGGATTGTCGAGTCTGGGGTCCCTTACGTTCTAGGATTCCTTCCCAACCTTCTCGTCCCAACAAAGTCGCTGACATCGTTGATAACAAGGACGCCGTTTCCAGGCTCCAAGTCATTGCTCGTGCTGGATGAATCTGACTGCATGGCATCGGGAGCACAGCAAGCTTTGAGAAGGACAATGGAGATATATTCTAATTCTGTTTGTTTTGCTCTCGTTTGCAATACATCTCCTAAGATCATTGAACCGATTCAGAGCAGATGTGCCATTGTGCGGGTTTCACGCTTATCTGATCAAGAGATATCGGATCGCCTCATGGTTGTGGTTCAAGCAGAGAAGGATCATTTTCACCGCTGA 1242 0.4847 MEHLIFLAEVPLNPEANKEKVTQVTFETFNVPAMYVAVQAVLSLYANGRTTGVLRSSLESKDILGDGYESDVLGESTPDAVISGFMKGEKELIEELLQTEINMSRWECSHAAYGGFLENPPPTPSAVTTVSPPAPAPVAAAATFSVNAPNFMAKDVGFENTAGAEKHQAVALSVTADQAVFFNFGVFQNRELIVKEPMENQQCMVTGPKPTALVHLCSGVATSQGNPLEPQGGYMPWIGSTFKETCTYYEYNNKRPGANTVARVTWPGVKTVTPFEAADYYPGRSYGLANSTQRDAWIVESGVPYVLGFLPNLLVPTKSLTSLITRTPFPGSKSLLVLDESDCMASGAQQALRRTMEIYSNSVCFALVCNTSPKIIEPIQSRCAIVRVSRLSDQEISDRLMVVVQAEKDHFHR* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01311 413 Gene3D - 316 389 IPR027417 -
Rops3g01311 413 Pfam Pectinesterase 140 183 IPR000070 GO:0030599|GO:0042545
Rops3g01311 413 Pfam Pectinesterase 230 281 IPR000070 GO:0030599|GO:0042545
Rops3g01311 413 Gene3D - 1 70 - -
Rops3g01311 413 PANTHER PECTINESTERASE 139 184 - -
Rops3g01311 413 PRINTS Actin signature 42 61 IPR004000 -
Rops3g01311 413 PRINTS Actin signature 17 30 IPR004000 -
Rops3g01311 413 Gene3D - 188 311 IPR012334 -
Rops3g01311 413 SUPERFAMILY Pectin lyase-like 138 305 IPR011050 -
Rops3g01311 413 SUPERFAMILY Actin-like ATPase domain 2 53 IPR043129 -
Rops3g01311 413 Gene3D - 109 187 IPR012334 -
Rops3g01311 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 409 IPR027417 -
Rops3g01311 413 Pfam Actin 2 54 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01311 Rops-Chr3 18914986 18916723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01311 330 408 Core DNA Replication Machinery Family AT1G63160 73.418 1.19e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01311 K10755 K01051 gmx:100784682 193.356