Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01310 ATGAGAATTGTTATTCTGTATGCTTGGTTGGTATGCTTTGCTCCACAATGTTTAGCAGCAGATACTTTGAACGCTGGCCAGAAGATAATAGGCAATGGAACTGTCCTTGTTTCATCTGGAAAGAAATTTGAACTTGGTTTCTTTTCTCCTCTTAGTGTCACTGGTGGTAAAGGAAGATACTTAGGGGTATGGTATCACCGGCAAGACGGTTCAGAACCTCTAACAGTGGTGTGGGTTGCCAACAGAGATTACCCTTTACCTGTTGATTCTATTGGAGATTTTCAAATTGCAGTGGATGGGAATCTGGTAGTAATGGACACTTCTGGTAAGAGCTATTGGTCAGCCAAAGTCAAAGACTCTTCTTTATCCACAAATAGGACAGTGAAACTCATGGATTCTGGGAACCTAGTGTTACTAGTTGAACATGTGGGAAAGAAACTTTGGGAGAGTTTTGAACACCCAACTGACACTTTCCTACCAGGCATGAAGATGGATAGGAATTTGGAATTGACCAGTTGGAAAAGCCCACAAGATCCAGGAAGTGGGAACTTCACTTTTAAGATGGAACCAAAAAGTGGCAACCGTTTCATCATCTTAAACCAAGACCAAATTTACTGGGAGAGTGAAGAACAAGGGATTATAAATTCAGAAGAAAATTCTGATGACATGAGCACTGAAGTTTACAACTTGTTGACCAACTTTACCGTGATTCCACGTAGGAACATAACGAGCTACAAGAACACAAGGCTTCTCCTCAATTCTACAGGAGTGATACAATTTCTGTTGAGGAATGATTTCCAAGGTGACTCCGTACAGTGGCTGCAGCCAAAAACAAAGTGTTTGACATATAACAGTTGTGGGAACTTTGCCAGTTGCAATGACAATGACAAGACATGCAGATGTTTGCCTGGATTCTTAGATCCTCAAAATGATTACATGGGAGAGGGAGATTCTTCTTCTCTATCATGTACGAGAAGAAAATCAGCACCATGTGGAAAAGACGCAACTTTCTTAAACTTGGCCATGATGAAAATAGGAAGTCCTGATAGAAAAGTCATAGCAGAAAATGAAACAGAATGCCAATCAAAATGCCTTGAGATGTGCCCCGTTTGCCAGGCTTATTCATATGCGACACCTACACTGCAGCGTGTTCTTAATCCCTCCACTTGTTGGATCTGGACAAACAATTTAACTACTCTTAAAGAAGAGTACCTTGATGGCCATGGTCGTATACTCTCTGTCCTTGTTGACAAATCAGACATAGCACAAACTCCAAAAACTTGTGAACCTTGTGGCACAAACATAGTCCCTTATCCACTGAGCACTGGACCCAGTTGCGGAGACCCTGCTTACTCCAATTTCAACTGCAACAGCTCAACATATCAACTTAGCTTCGTCACGAACAGTTACCGAGTTACTCGAATAGATCCAGGTTCAAGGAGGTTCTTCATCCGGGTCGTTCAGAAAGAGGATAATTCGTTTAATCGTTACTGTGGTGAAGGAACTCGACACAATGAAAATCTGAATGTTTCTTCACCATTTATTAAGACCAACAACGACCAGTGCTCTGACCAAGTAGAAGTTAGTTGGCAACCACCATCCGAACCCACCTGTGCTAAGCCCAGTGATTGCGACGGTTGGAAACATTCAACTTGCAAAGGAAAAAGGTGTCTTTGCAATGCAAATTATTACTGGCATGGCGATATTTTAAGTTGTACAGAAAAAGCTATATCCCCTTCTAAACCTACTTTAGAAGAGGCAAAAGGAAAAGGAAACTCCGAAAGCTCACTGTCTTTGATTCTTGGCATAACTCTTCCAGGCGTGGTTATTCTGGCATGCATAATTATTTTCGCTTATGTATGCAGAAGGAAAATAGCTCTTAAGCTTAAGCAAGACAAGGAAAGCATACAGAGAAATAGAAGGGGCTTTTATGACAGTGAAAGACATGTGAAAGATTTGATAGACATGGAGGGATTGGAAGAAAATGACAATGAAGGCATAGAGGTCCCTTATTTTGATTTTGAGAGCATACTAGTAGCTACAGATCATTTCTCAAATGCAAATATGCTTGGTAAAGGAGGTTATGGGCCAGTTTACAAGGGCAAGCTTCCAGGTGGTCAAGATATTGCTGTAAAGAGGCTTTCAAGTGTTTCATCACAAGGCTTACAGGAATTCAAGAATGAGGTTGTTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTCAGGGGCTATTGCATCAAAGGAGATGAAAAAATTTTACTTTATGAATATATGCCTAACAAGAGCTTAGATTCATTTATATTCGATCCGACAAAAAGTGTGCTTTTGGATTGGCAAATGCGGTTTGATATAATTCTTGGAATTGCTCGTGGGCTACTTTATCTTCACCAAGACTCAAGACTGAGAGTAATTCACAGAGATTTGAAAACCAGCAACATTCTTCTAGATGGGGAAATGCAACCTAAAATTTCAGACTTTGGATTAGCAAGAATATTTGGGGGCAAAGAGACTGAGGCTAGCACCGAGAGGGTGGTGGGGACTTATGGATACATGTCTCCTGAATATGCATTGGATGGACATTTCTCAACCAAATCAGATGTTTTCAGCTTTGGTGTACTCTTGCTTGAGATTATCAGTGGGAAAAAGAATACAGGATTTTATCGACATAAAGAAATTTCAAGCCTTTTGGGTTATGGCTGGAAACTATGGAAAGAGAACAAGTTGCTGGAATTAATGGACACAACTCTGCGTGAAACTTGCAATGCAAACCAATTCATTAGGTGTGCGCATATTGGACTGTTGTGTGTCCAAGATGAACCAGATGATCGACCAAACATGTCAAATGTTGTGATCATGCTTGACAGTGAAACTGCAAGCCTTCCAACCCCTAAAGAACCGACCTTTTTCACGCGTAAAGAGCTATCTAGTACAGCTTCTTCAAGTTTGCCGATTGAGAGTAGCATTCAAGAAGCCCGATAG 2985 0.409 MRIVILYAWLVCFAPQCLAADTLNAGQKIIGNGTVLVSSGKKFELGFFSPLSVTGGKGRYLGVWYHRQDGSEPLTVVWVANRDYPLPVDSIGDFQIAVDGNLVVMDTSGKSYWSAKVKDSSLSTNRTVKLMDSGNLVLLVEHVGKKLWESFEHPTDTFLPGMKMDRNLELTSWKSPQDPGSGNFTFKMEPKSGNRFIILNQDQIYWESEEQGIINSEENSDDMSTEVYNLLTNFTVIPRRNITSYKNTRLLLNSTGVIQFLLRNDFQGDSVQWLQPKTKCLTYNSCGNFASCNDNDKTCRCLPGFLDPQNDYMGEGDSSSLSCTRRKSAPCGKDATFLNLAMMKIGSPDRKVIAENETECQSKCLEMCPVCQAYSYATPTLQRVLNPSTCWIWTNNLTTLKEEYLDGHGRILSVLVDKSDIAQTPKTCEPCGTNIVPYPLSTGPSCGDPAYSNFNCNSSTYQLSFVTNSYRVTRIDPGSRRFFIRVVQKEDNSFNRYCGEGTRHNENLNVSSPFIKTNNDQCSDQVEVSWQPPSEPTCAKPSDCDGWKHSTCKGKRCLCNANYYWHGDILSCTEKAISPSKPTLEEAKGKGNSESSLSLILGITLPGVVILACIIIFAYVCRRKIALKLKQDKESIQRNRRGFYDSERHVKDLIDMEGLEENDNEGIEVPYFDFESILVATDHFSNANMLGKGGYGPVYKGKLPGGQDIAVKRLSSVSSQGLQEFKNEVVLIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDPTKSVLLDWQMRFDIILGIARGLLYLHQDSRLRVIHRDLKTSNILLDGEMQPKISDFGLARIFGGKETEASTERVVGTYGYMSPEYALDGHFSTKSDVFSFGVLLLEIISGKKNTGFYRHKEISSLLGYGWKLWKENKLLELMDTTLRETCNANQFIRCAHIGLLCVQDEPDDRPNMSNVVIMLDSETASLPTPKEPTFFTRKELSSTASSSLPIESSIQEAR* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01310 994 Gene3D Phosphorylase Kinase; domain 1 650 759 - -
Rops3g01310 994 MobiDBLite consensus disorder prediction 964 994 - -
Rops3g01310 994 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 119 977 - -
Rops3g01310 994 SUPERFAMILY Protein kinase-like (PK-like) 666 977 IPR011009 -
Rops3g01310 994 CDD STKc_IRAK 690 956 - -
Rops3g01310 994 ProSiteProfiles Bulb-type lectin domain profile. 20 151 IPR001480 -
Rops3g01310 994 SMART serkin_6 684 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01310 994 Pfam PAN-like domain 331 398 IPR003609 -
Rops3g01310 994 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 760 963 - -
Rops3g01310 994 Pfam S-locus glycoprotein domain 242 305 IPR000858 GO:0048544
Rops3g01310 994 Gene3D - 16 153 IPR036426 -
Rops3g01310 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Rops3g01310 994 ProSiteProfiles Protein kinase domain profile. 684 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01310 994 ProSiteProfiles PAN/Apple domain profile. 331 416 IPR003609 -
Rops3g01310 994 Pfam D-mannose binding lectin 75 169 IPR001480 -
Rops3g01310 994 FunFam Putative G-type lectin S-receptor-like serine/threonine-protein kinase 647 759 - -
Rops3g01310 994 CDD B_lectin 29 154 IPR001480 -
Rops3g01310 994 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 209 IPR036426 -
Rops3g01310 994 Gene3D Transferase(Phosphotransferase) domain 1 760 966 - -
Rops3g01310 994 SMART blect_4 27 154 IPR001480 -
Rops3g01310 994 Pfam Protein tyrosine and serine/threonine kinase 687 953 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01310 Rops-Chr3 18884075 18889120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01310 582 973 Receptor kinase-like Gene Family AT4G23190 49.114 8.52e-127 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01310 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01310 - - tpra:123882048 1300.8