Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01309 ATGTTAAACACCAAAGGAGAGACCATAAGGATAATTATCCTTAACTGGTCTTGTAGCCACATGCTGTCTATTTTCCTTTTGTGTTCATTCTTTTTCACCTTTAAGCATTGCTCAGCTAGAGATAGCTTAACCATTAACAACTTGTTACAAGATGGGGGAGAGGATACTCTCATTTCAGCAGGAGAAAATTTTGAACTAGGATTTTTCACTCCTAATGGAAGTTCAAGTGGCAGAAGATATGTGGGAATATGGTACTACAACTTGACTCCAAAAACAGTTGTGTGGGTTGCTAACAGAGATATCCCTCTTCTAGATTCTGGGGGTGCTTTTGGCATTGAAGAGGATGGGAATCTTAAGGTTTTGGACAAAAGTGGGAAATCCTATTGGGGGACAAAGCTTGAAAGATCATCTTCACAGCACAAGACATTAAAACTATTGGACAGTGGGAACCTTATTGTAAGTGACGAAGAGAAAGGAAATCATACAGTGAAGATTCTGTGGCAGAGTTTTGCTAATCCAACAGATACATTTCTTCCAGGGATGAAAATGGATGGCAAATTAGCATTAACTTCATGGAGAAGTTATGATGATCCAGCACCAGGGAACTTCTCATTTGAGCAAGATCAAGGAGAGAATCAGTATATCATATGGAAGAGATCCGTGAGGTATTGGAAAAGCAGTGTATTAGGTAAATTTGTTGGAACTGGTGAGATGTCTTCAGCAATATCTTACTTTTTGTCTAATTTCACCATGAGAATATCCCCAAACAACACTGTTCCCTTTCTCACTTCATCACTATATAGTGACACAAGGATGGTCATGACTTACTGGGGTCAACTTAAGTATCTCAAGATGGATTCAGAGAAAATGTGGTTGTTAGTTTGGGTAGAGCCTAGAGATAGATGCAGTGTGTTCAATGCTTGTGGAAACTTTGGAAGCTGTAATAGCAAGTATGTTTCTATGTGCAAGTGTTTGCCTGGATTCAAGCCTAATTCTCTTCAAAGTTGGAATGCTGGAGATTTTTCAGGTGGTTGTAGCAGGAAAACAAATGTGTGTAGTGAGGATGCTAAGAGTGATACATTTTTGAGCTTAAAAATGATGAAAGTAGGGAATCCAGATGCTCAATTTAATGCTGAAAATGAAGAGGAATGCAAGTTAGAGTGCCTCAACAATTGTCAATGCTATGCTTATTCATATGAAGAGATTGAAAAGGAAAGGAAGGGTGATGGTGCTAATGCAATTTGCTGGATTTGGTCTCAGGACTTGAACAATCTTGAAGAAGAGTATGATGGTGGGTGTGACCTGCATGTTCGAGTTTCATTTTCTGATATAGAATCCACTGGGAGCAGTTGTGGGACTTGTGGCACAAACTTCATCCCATATCCCCTTAGTACAGGACCTAATTGTGGTGACCCCATGTACTTCAATTTTCACTGCAACACTTCCACTGGTGAGCTTGACTTTGAGACTCCTGGGGGCACCTATCAAGTGATAAGCATAAACCAAGAAACACAAAAATTCTTGATCCACAGAAAAAATGTACTTAATTGTGAGGGTCAAAGTTCAAGGGACAAGCTTCTGATTCTCAACCAGTCATCTCCATTTCATCTTACTGGCAATTGCTATGCTGATCCAAGCACTTTTAGTTCTAATGCTCCCATGAAACATGGAATAGAAATAGAACTAAGTTGGGACCCACCATTGGAGCCAATTTGTTCTTCATTGTTGGACTGCAAGGACTGGCCAAATTCAACTTGCAATACTACCAGTGATTGGAAGAAGAGATGCCTTTGCAATAAAAACTTCCTTTGGGATGGCTTGAAATTAAATTGTACTCTAGAACATGATAGTTACCAAACAGAAAGGCATCTGTCTTCACCAAAGACCATTGTAGTCACTTTTACAACTGTGATTTTCTTAATTATTCTCTCCAGTACTGTTACATGTATTTACTTAAGGAAAAGGAGACAGGCCAAAACACAAGAAAGCAGGGGATATGTTCAGAAAAACTCAGGGATAAACTTGTATGACAGTGAGAGACATGTTAGAGACTTGATTGAATCTGGTAGGTTCAAAGAAGAGGATGCACAGGCCATAGATATTCCGCATTTTCATTTGGAAAGCATATTTGATGCTACTAATAATTTTGCAAATGCAAACAAGCTTGGACAAGGGGGATTTGGTCCTGTCTACAAGGGAAAATTTCCTGGAGGACAAGAAATAGCAGTAAAGAGACTTTCAAGTTGTTCTGGACAAGGTTTAGAAGAGTTTAAAAATGAAGTTGTGTTGATTGCCAAGCTTCAACATCGAAACCTAGTTAGACTTCTGGGTTACTGTGTGGAAGGAGATGAAAAGATGCTAGTATATGAATATATGCCAAATAGAAGCTTGGATGCATTCATTTTTGACCGGAAGCTGTGTGTTCAATTAGACTGGGATATGCGCTTCAAGATTATTTTGGGGATTGCTCGAGGGCTTCTTTATCTACACGAAGATTCTAGGTTGAGGATTATTCATAGAGACTTGAAAGCAAGTAATATTCTACTAGATGAAGAGAAGAATCCTAAAATCTCAGACTTTGGCTTAGCAAGGATATTTGGAGGAAAAGAAACAGTAGCAAACACAGAAAGAGTGGTTGGAACTTATGGATATATGTCTCCAGAGTATGCACTTGATGGACATTTTTCAGTTAAGTCTGATGTCTTTAGCTTTGGTGTGGTGGTACTTGAGATTATTAGTGGAAAAAGGAACACTGGATTTTATCAAGCTGAACATGAATTGAGTCTTCTAGGATATGCATGGCATTTGTGGAAAGTTGGCAGGGCATTGGACTTCATGGACCAGACACCAAGTCAAACCTGCAATGCAAATGAATGCTTGAAATGTGTGAATGTGGGGCTCTTATGCTTACAAGAAGATCCAAATGAACGTCCCACTATGTCAAATGTGGTTTTCATGCTTAGCAGTGAATCTAATACTCTTCCAACTCCTAAGGAACCAGCTTTTGTTACAAGGAGATGCCCTTCAAGTAGAGCATCCACTTCCAGCAAAATGGAAACTTTTTCACGTAATGAATTGACCGTCACTTTAGAAAATGGCAGGTAG 3105 0.3919 MLNTKGETIRIIILNWSCSHMLSIFLLCSFFFTFKHCSARDSLTINNLLQDGGEDTLISAGENFELGFFTPNGSSSGRRYVGIWYYNLTPKTVVWVANRDIPLLDSGGAFGIEEDGNLKVLDKSGKSYWGTKLERSSSQHKTLKLLDSGNLIVSDEEKGNHTVKILWQSFANPTDTFLPGMKMDGKLALTSWRSYDDPAPGNFSFEQDQGENQYIIWKRSVRYWKSSVLGKFVGTGEMSSAISYFLSNFTMRISPNNTVPFLTSSLYSDTRMVMTYWGQLKYLKMDSEKMWLLVWVEPRDRCSVFNACGNFGSCNSKYVSMCKCLPGFKPNSLQSWNAGDFSGGCSRKTNVCSEDAKSDTFLSLKMMKVGNPDAQFNAENEEECKLECLNNCQCYAYSYEEIEKERKGDGANAICWIWSQDLNNLEEEYDGGCDLHVRVSFSDIESTGSSCGTCGTNFIPYPLSTGPNCGDPMYFNFHCNTSTGELDFETPGGTYQVISINQETQKFLIHRKNVLNCEGQSSRDKLLILNQSSPFHLTGNCYADPSTFSSNAPMKHGIEIELSWDPPLEPICSSLLDCKDWPNSTCNTTSDWKKRCLCNKNFLWDGLKLNCTLEHDSYQTERHLSSPKTIVVTFTTVIFLIILSSTVTCIYLRKRRQAKTQESRGYVQKNSGINLYDSERHVRDLIESGRFKEEDAQAIDIPHFHLESIFDATNNFANANKLGQGGFGPVYKGKFPGGQEIAVKRLSSCSGQGLEEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKMLVYEYMPNRSLDAFIFDRKLCVQLDWDMRFKIILGIARGLLYLHEDSRLRIIHRDLKASNILLDEEKNPKISDFGLARIFGGKETVANTERVVGTYGYMSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQAEHELSLLGYAWHLWKVGRALDFMDQTPSQTCNANECLKCVNVGLLCLQEDPNERPTMSNVVFMLSSESNTLPTPKEPAFVTRRCPSSRASTSSKMETFSRNELTVTLENGR* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01309 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
Rops3g01309 1034 Pfam Protein tyrosine and serine/threonine kinase 719 985 IPR001245 GO:0004672|GO:0006468
Rops3g01309 1034 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 792 995 - -
Rops3g01309 1034 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 142 1012 - -
Rops3g01309 1034 Gene3D - 36 171 IPR036426 -
Rops3g01309 1034 Pfam D-mannose binding lectin 92 185 IPR001480 -
Rops3g01309 1034 Pfam PAN-like domain 355 424 IPR003609 -
Rops3g01309 1034 SMART blect_4 46 173 IPR001480 -
Rops3g01309 1034 Gene3D Transferase(Phosphotransferase) domain 1 792 999 - -
Rops3g01309 1034 ProSiteProfiles Protein kinase domain profile. 716 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01309 1034 CDD B_lectin 46 173 IPR001480 -
Rops3g01309 1034 CDD STKc_IRAK 722 987 - -
Rops3g01309 1034 Pfam S-locus glycoprotein domain 231 331 IPR000858 GO:0048544
Rops3g01309 1034 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 35 170 - -
Rops3g01309 1034 SUPERFAMILY alpha-D-mannose-specific plant lectins 93 198 IPR036426 -
Rops3g01309 1034 SMART ntp_6 356 439 IPR003609 -
Rops3g01309 1034 Gene3D Phosphorylase Kinase; domain 1 680 791 - -
Rops3g01309 1034 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 681 791 - -
Rops3g01309 1034 ProSiteProfiles Bulb-type lectin domain profile. 42 166 IPR001480 -
Rops3g01309 1034 ProSiteProfiles PAN/Apple domain profile. 352 440 IPR003609 -
Rops3g01309 1034 SMART serkin_6 716 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01309 1034 CDD PAN_AP_plant 352 440 - -
Rops3g01309 1034 SUPERFAMILY Protein kinase-like (PK-like) 700 1020 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01309 Rops-Chr3 18861170 18866830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01309 709 1002 Receptor kinase-like Gene Family AT4G23230 61.905 1.71e-124 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01309 PK_Tyr_Ser-Thr 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01309 - - gmx:100775297 1845.86