Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01286 ATGAACCGCATGGCCAAATCCGTGCAGCGGTGTTCAGAAGGAAAGAATGGAACCAGAGGACATGCATATGAAATGCGTGATGCTGGGGCTGTTATCCATAGTCATGGGATAGAATCTTGTCTTGTAACAATGCTCAATCCTTTGTCAAAGGAGTTTCGAATTACACACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGAGGAACTTGTGGTCCCCATGATAGAGAACGCAGCAGGATTCATTCATGTGTCAAAATTAGAGGACCTAAGTCTGGTTCTGTGGGTGCATCTATTGTATGTGAAGCAAGAAGGAACCCAGATTTCCCAAGGCCAACAAAGAGAATATGACCCAAGTTATGTTCGAGACTTTCGATGTGCCTGCCATGATATGCTCATTAAAGAAATACCAAGCAAGGTATTGCAAGAACGTCCTTGCGCAGCAAATGGAAATAACCATACAGGGGCTTCTAACAGTGGTAGTGCACCGGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGAAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGTCGAGCTGTAAACTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGATCCAAGAAATTATACATCATACCAGGAACTGTCTTCTGACCTTGAGAAGATGTTCAGCTGTTTTATCCTAGGTCAATATGGTTCCCATGGAACTCCGGGAAGAGACATGTCAAGTGAGAGCAAGCTGAAGGACTTCCTGCATGGTTCAGAATATGTGCTCACTTATGAAGATAAAGATGGCGACTGGATGCTTGTAGGAGATGTACCGTGGGATATGTTTGTTGACACGTGCAAAAGGCTGAAAATCATGAAGAGTTCCGATGATATTGGCTTAGCTCCCAGGGCCATGGAAAAATCCAAGAATAGGGACTGTTGA 975 0.4359 MNRMAKSVQRCSEGKNGTRGHAYEMRDAGAVIHSHGIESCLVTMLNPLSKEFRITHMEMIKGIKGHGYYEELVVPMIENAAGFIHVSKLEDLSLVLWVHLLYVKQEGTQISQGQQREYDPSYVRDFRCACHDMLIKEIPSKVLQERPCAANGNNHTGASNSGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGRAVNFVKVSMDGAPYLRKVDPRNYTSYQELSSDLEKMFSCFILGQYGSHGTPGRDMSSESKLKDFLHGSEYVLTYEDKDGDWMLVGDVPWDMFVDTCKRLKIMKSSDDIGLAPRAMEKSKNRDC* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01286 324 Pfam AUX/IAA family 149 314 IPR033389 -
Rops3g01286 324 SUPERFAMILY AraD/HMP-PK domain-like 21 97 IPR036409 -
Rops3g01286 324 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 151 309 IPR003311 GO:0005634|GO:0006355
Rops3g01286 324 Gene3D - 200 316 - -
Rops3g01286 324 ProSiteProfiles PB1 domain profile. 203 305 IPR000270 GO:0005515
Rops3g01286 324 SUPERFAMILY CAD & PB1 domains 204 304 - -
Rops3g01286 324 Gene3D - 18 91 IPR036409 -
Rops3g01286 324 FunFam Auxin-responsive protein 198 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01286 Rops-Chr3 18657047 18658581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01286 201 305 B3 DNA Binding Superfamily AT1G19220 32.381 6.07e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops3g01286 AUX_IAA 1.3e-79 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01286 K14484 - gmx:100500373 327.791