Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01280 ATGGTCTTCAATGCTTCAACTTCAGAAGGGTCAGTGATATTATCCTGCGCGGCGGCCAGTAGCAAGCAACAGCAAAACCACAAGATGAAAACAACTTCATGCTTGCAACCCTTTGAAAGATGCATCACCAGAACTCTTAAATATGCTCATAAACTACCACGCTATGGTCTTGAAGTAGACCTTACAAACTATGCAGCAGCTTACTGCACAGGACTCTTGTTGGCCCGTCGTGTCCTTAAAATGCTTGAAATGAATGAGGAGTAG 264 0.4394 MVFNASTSEGSVILSCAAASSKQQQNHKMKTTSCLQPFERCITRTLKYAHKLPRYGLEVDLTNYAAAYCTGLLLARRVLKMLEMNEE* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01280 87 Gene3D - 42 87 - -
Rops3g01280 87 PANTHER RIBOSOMAL PROTEIN L5-RELATED 9 87 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Rops3g01280 87 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 47 86 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Rops3g01280 87 SUPERFAMILY Translational machinery components 47 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01280 Rops-Chr3 18474581 18474844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01280 42 87 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 76.087 6.07e-19 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01280 K02932 - ming:122064668 78.1814