Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01270 ATGGATCCGTTATGCGAGCTTTGTGGGGTTGTAACAGCTGTGATTTACTGCAAATCAGATTCTGCACGACTCTGCTTGGATTGTGATGTGCATGTACACGCTGCTAATGCTTTGTCTTGTAGGCATCCACGTTGTGTCCTTTGTGACAAGTGCAATTGCCAGGCAGCAGTTGTTCACTGCATGGATGATAAGATATCTTTGTGTCAATGTTGTGATTGGAACCAAATTGAATGTTTGGTGTTCGGACACAAACATCAGATTTTGAATTGTTACACGGGTTGCCCTTCTTTCACTGAGTTTCCTACGTTATTGTCCTTTGTGCTTGATGGTGCTGCTTCCTCAAGTGACTCGGATCATATTTTGGGATCACATAATGCATTACCTAGGAATGATAGCTGCACTAGCAAGTGTTTGCAGCAACCAGATAATGATGGCCCCTTTGATTTGTTGAGTGAAAAGTTGAATGAAAAAGAACCATGTGTCAAATTTGAAACTTGGATGGAGCAATCTTCCATCATTTCACCAGATCCAAATTGCCAGAACCTGCCAAAGCTGCAGGAATGTCCTAATTTCAAGGATCTAGTATTCCATGATGGCGATGGTCTCAGCAAGGATAATGTTCAATTTAACTTTGAAAACAGTGCTGAAATGTTTGATTGTTTTCAAATTGCCACAAGAAACTACCTTGATAATGGAGGAATGGGCTGTTCATTAAAGGAAAACAACATATCAGTTGCGGAATCTGATGTTGCTATTAAGAGTGCCATGGAGGCACCATCACCAGTCCAACAAGATTGTATGGCTTTTCAGTCATCCAAGGCTAGTGGCTCAACTAGTGTGATGCAGGGTATCAACAATGATGCAAATTGTGTACTTATGCATCCTAGTTTCAATGAAAACATCAATATAGGATTTCCTCAGGGCCAAGTTCCTTCCAGCATATCACTTCCATTACCCAAAATCATTGGTGAAAGTAGCGTTACTGATTATCAAGATTGTGGATTATCACCCATGTTTCAGACAGGTGAAACCCTGTGGGAATCAAATTTGGAGGGTACATGCCCACAAGCCAGGGAGAAAGCTAAAATGAGATACAATGAGAAAAAGAAAAGTCGAAGGTTTGATAAGCAAATAAGATATGTGTCTCGCAAAGTGAGGGCTGATACAAGAAAACGTGTGAAAGGAAGATTTGTGAAAGCAAATGATGTAATTGATTATGATCTTCAAGGGGATCTGGGATTTGGATCCTCTCCTGTTCAAGAATAA 1266 0.406 MDPLCELCGVVTAVIYCKSDSARLCLDCDVHVHAANALSCRHPRCVLCDKCNCQAAVVHCMDDKISLCQCCDWNQIECLVFGHKHQILNCYTGCPSFTEFPTLLSFVLDGAASSSDSDHILGSHNALPRNDSCTSKCLQQPDNDGPFDLLSEKLNEKEPCVKFETWMEQSSIISPDPNCQNLPKLQECPNFKDLVFHDGDGLSKDNVQFNFENSAEMFDCFQIATRNYLDNGGMGCSLKENNISVAESDVAIKSAMEAPSPVQQDCMAFQSSKASGSTSVMQGINNDANCVLMHPSFNENINIGFPQGQVPSSISLPLPKIIGESSVTDYQDCGLSPMFQTGETLWESNLEGTCPQAREKAKMRYNEKKKSRRFDKQIRYVSRKVRADTRKRVKGRFVKANDVIDYDLQGDLGFGSSPVQE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01270 421 SMART bboxneu5 1 47 IPR000315 GO:0008270
Rops3g01270 421 Pfam CCT motif 358 400 IPR010402 GO:0005515
Rops3g01270 421 CDD Bbox1_BBX-like 4 47 - -
Rops3g01270 421 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Rops3g01270 421 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01270 Rops-Chr3 18316119 18317882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01270 1 407 C2C2-CO-like Transcription Factor Family AT3G21880 37.621 1.04e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops3g01270 CCT 3.4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01270 - - gmx:100804738 488.419