Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01268 ATGGTTGAACGAAAGCAATTCAAGACGAGGTTGTGCGTGCTTTATCAGAGAGGTCGCTGCACGCGCCACAACTGTTCCTTCGCTCATGGGAATGCCGAGCTTCGACGATTCTCTTCCTCTTATAGTGGTGGTAGGAGAGAGTATTTAGGTAATGACTTGAGGGATAAACTTGATAGAAGGCATTTATCACCTCGAAGGTACTCACCAGATCGAGATGCAAGAGGCCGCCAGACCATTCGTGAATACAGTCCCCCAAGGTCTTTGGAGAAAAAAAGTGACAGAAGACAGAGAAGAAAACAGGACATTACTGGCCAAAGTGATATCTCTGGAAGTTTGAAAGTCTCAGATAGAATTCAAGATCGAATTAAAGAAGGAAAATTGCTTCCTTCTGGTTCTAGAAATACTCTTGAGGAGCAGCTGAAGATAGTACATTCAGATATCAACACACTTGAGAACCGGAAATTCCAACTAGCGGTCTACTTAGATGAGAGTGTTCAAGAAGTGGATAGCCTTAATTCTAGAATTCAGGAACTGGAGGCTCAATTAAGCAAGGAGAATGAGGAGTGTAAAAGAATTACTTCAAGAATAAGGAAGTTTATTAAAGTGCACAATCATAACTCACAGTTACAAGATGAACTGAAGAGATCACAGGTTCGACTTCAAAGGTTTGGAGATCAGCTTATATCGGACATTTCTAGACTTGGTGTCAATGAAGAAGATTTAAGTGTTGATATTGTAAGCAACGGTGAGAATACGGGTCTTCCTCCAATCATCAAACATAATTTAGATCAGAATGTTGCATCTCCCCGCAGAAAAAGGCAACATGTTGAACAAGATGCCATGGAAGAGTTAAAACAAGATAGATCAAAAGTTGGGCATTTGGCTGAAACAGCTAGAACCAGGAAGCGTTCTCGCTGGAATTTGTCTGCTCCATTGAATGACAAGGGTTATGAGGGCCTTGAAGCCCCAAACAATGGAACTGAAGTTACTAGGCCCCTAGATCTTGAAGGCAAGCACAAGAAAGAAATATGGAATTCTGCGAACAACCTTCGTTCAGAAAAGTTGAAGGAATCCAGGATTGAAGTGCCATCAACCAGCATGGCAGCTCATGTGCTTGATGAGGAAGTTGAGATTGAACTTGATGATGGAATTGATGTCAACAAAACCGCAAACACAGAAAATGAGAATGGAATGGCATTTGAGGTGAAGGGTGTACCTCTTATGCTTCCCCCAGCTTTGATTCCTAGTAGCAATTATTCGCAGTATGAGGGTAAAGACGAGAATGTGGATGTGGATGGTCTTGATGAAGAGGCAGCAGGGGCACTTGTGGATATAGTCTAA 1341 0.4221 MVERKQFKTRLCVLYQRGRCTRHNCSFAHGNAELRRFSSSYSGGRREYLGNDLRDKLDRRHLSPRRYSPDRDARGRQTIREYSPPRSLEKKSDRRQRRKQDITGQSDISGSLKVSDRIQDRIKEGKLLPSGSRNTLEEQLKIVHSDINTLENRKFQLAVYLDESVQEVDSLNSRIQELEAQLSKENEECKRITSRIRKFIKVHNHNSQLQDELKRSQVRLQRFGDQLISDISRLGVNEEDLSVDIVSNGENTGLPPIIKHNLDQNVASPRRKRQHVEQDAMEELKQDRSKVGHLAETARTRKRSRWNLSAPLNDKGYEGLEAPNNGTEVTRPLDLEGKHKKEIWNSANNLRSEKLKESRIEVPSTSMAAHVLDEEVEIELDDGIDVNKTANTENENGMAFEVKGVPLMLPPALIPSSNYSQYEGKDENVDVDGLDEEAAGALVDIV* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01268 446 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 434 IPR045868 GO:0046872
Rops3g01268 446 MobiDBLite consensus disorder prediction 55 102 - -
Rops3g01268 446 Coils Coil 133 153 - -
Rops3g01268 446 Coils Coil 161 195 - -
Rops3g01268 446 Coils Coil 206 226 - -
Rops3g01268 446 MobiDBLite consensus disorder prediction 266 300 - -
Rops3g01268 446 Gene3D - 1 36 - -
Rops3g01268 446 MobiDBLite consensus disorder prediction 55 115 - -
Rops3g01268 446 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops3g01268 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01268 - - gmx:100793596 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01268 3 18282467 18290201 Rops3g01268 3 18282467 18290201 ECH