Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01260 ATGGGAAGCCAGAGTTACTTCAAGGTTTTGATCATCGGTCTTATAGCATTAATTGGATCAACTCATGCTGATTTGCAGCCTGGTTTCTATACTAAAAGTTGCCCAAAGGCTCAGAAAATCGTTTTGAAATATGTTCTTGACCATGTCACCAAGGTCCCATCACTTGCAGCTGCCCTCATAAGACTGCACTTCCATGACTGTTTTGTCAGGGGTGGACCCTATTGGAATGTTCCAACAGGTCGAAGGGATGGGGTCATCTCTATCGCAACAGAAGCCCTTCGTGGCCTCCCTGCTCCATTTCACAACCTCACCACCCTCCTTACTATCTTTGGCAATGTTGGACTTGATGCAAATGACTTGGTCTTGCTCTCTGGTGCGCACACGATTGGTATGTCCCATTGCTCATCACTTGCAAACAGACTGTATAATTTTACTGGCAAGGGTGATCAAGACCCAAGTCTAGACAGTCAATATGCAACAAATCTCAAGACCTTTAAGTGCAAGAACATCAATGATAAAACCACAATTATTGAGATGGACCCTGGAAGTCAAAATACATTTGATCTTGGTTATTACAATCAAGTAATTAAGAGAAGGGGCCTTTTCCAATCAGATGCTGCATTGCTAACTAGCTCAACTACAAGGTCTATTATCACCCAACAGCTTCAGTCAGCTCAAGGATTCTTTGCTGAATTTGCCAAGTCCATGGAGAAAATGGGCCGAATTAATGTCAAGACTGGGACTGAAGGAGAGATCAGGAAGCACTGTGCATTTGTAAATTAA 783 0.4304 MGSQSYFKVLIIGLIALIGSTHADLQPGFYTKSCPKAQKIVLKYVLDHVTKVPSLAAALIRLHFHDCFVRGGPYWNVPTGRRDGVISIATEALRGLPAPFHNLTTLLTIFGNVGLDANDLVLLSGAHTIGMSHCSSLANRLYNFTGKGDQDPSLDSQYATNLKTFKCKNINDKTTIIEMDPGSQNTFDLGYYNQVIKRRGLFQSDAALLTSSTTRSIITQQLQSAQGFFAEFAKSMEKMGRINVKTGTEGEIRKHCAFVN* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01260 260 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Rops3g01260 260 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops3g01260 260 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops3g01260 260 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops3g01260 260 Pfam Peroxidase 71 223 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops3g01260 260 Gene3D - 25 70 - -
Rops3g01260 260 Gene3D Peroxidase, domain 2 97 239 - -
Rops3g01260 260 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops3g01260 260 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops3g01260 260 ProSiteProfiles Plant heme peroxidase family profile. 24 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops3g01260 260 FunFam Peroxidase 97 239 - -
Rops3g01260 260 CDD secretory_peroxidase 25 259 IPR033905 GO:0004601|GO:0042744
Rops3g01260 260 ProSitePatterns Peroxidases proximal heme-ligand signature. 119 129 IPR019793 -
Rops3g01260 260 SUPERFAMILY Heme-dependent peroxidases 24 260 IPR010255 GO:0004601|GO:0006979|GO:0020037
Rops3g01260 260 PANTHER PEROXIDASE 25-RELATED 18 71 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops3g01260 260 Gene3D - 71 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01260 Rops-Chr3 18156987 18165458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01260 9 71 Peroxidase AT4G11290 50.794 5.15e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01260 K00430 - gmx:100785662 322.013