Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01248 ATGGAAGGTGGTCAGTTCCACCCTTTGGAGATGGGTCAGAACACTTCAGAGAGTGATATCCCTAAAATCCGTGAAGATGAGTTCGACAGTGCCACCAAGTCTTGTAGTGAAAACCATGAAGGTGTCTCTGGTGAGGACCAAGAACCACGCCCCAACAAAAAGAAACGTTACCATAGACATACCCAGCACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCTCACCCAGATGACAAACAAAGGAAAGAACTGAGCCGTGAGTTAGGGTTAGAGCCATTACAGATTAAGTTTTGGTTTCAGAACAAGCGTACCCAGATGAAGACTCAACATGAACGCCATGAGAACACACAACTTAGAACTGAAAATGAAAAGCTTCGAGCTGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGACCAACCGCTATAGGAGAAATGTCATTTGATGAGCATCACTTGAGGCTTGAAAATGCAAGGCTAAGAGAAGAGATTGATCGGATTTCAGCAATTGCTGCCAAGTACGTAGGCAAGCCTGTGGTGAACTATTCAAATCTTTCACCTTCTCTCCCTCCTCGTCCACTAGAACTTGGGGTAGGTGCTGGTTTTGGTAACCAGCCAGGGATTGGTGTGGATATGTATGGAGGTGGAGATCTTCTGAGGTCAATTAGTGGACCCACTGAAGCTGATAAACCATTAATAATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTAATTGGGATGGCACAAATGGGTGAACCTCTTTGGTTAACTACCCTTGATGGCACCTCCACCGTGCTAAATGAGGATGAATATATTAGGTCATTTCCTCGAGGAATTGGTCCAAAACCTACTGGTTTCAAATGTGAAGCTTCACGAGAAACTGCTGTTGTTATTATGAACCATGTCAACCTGGTTGAGATACTCATGGATGTGAATCAATGGTCCACTGTGTTCTCTGGTATAGTCTCAAGAGCCATGACAGTTGAAGTGTTGTCAACAGGGGTGGCTGGGAACTACAATGGTGCTTTACAAGTGATGACAGCAGAATTTCAAGTACCTTCACCTCTTGTGCCAACTCGTGAGAGTTACTTTGTAAGGTATTGTAAACAACATGCTGATGGGACTTGGGCAGTTGTGGATGTGTCTTTGGATAATTTGCGACCTAGTCCTTCATCAAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAATTGCCAAATGGCTACTCAAAGGTCACTTGGGTTGAGCATGTGGAAGTGGATGATAGAGGTGTTCATAATCTTTACAAGCAACTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGGTTGCAACTTTAGATCGACAATGTGAAAGGCTTGCAAGCTCCATGGCAACAAACATTCCCACTGTAGATGTTGGTGTGATAACAAACCAAGAAGGAAGGAAGAGTATGTTGAAACTAGCAGAGAGAATGGTGATAAGCTTTTGTTCTGGAGTGAGTGCTTCTACTGCACACACATGGACTACACTTTCTGGAACTGGAGCTGATGATGTAAGAGTCATGACCCGAAAGAGTGTTGATGACCCTGGAAGACCCCCTGGTATTGTTCTCAGTGCTGCCACTTCTTTTTGGCTTCCTGTTTCACCCAAAAGAGTCTTTGACTTCCTCCGTGATGAGAACTCTAGAAATGAGTGGGATATTCTTTCCAATGGTGGAGTTCTCCAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAATTGTGTTTCTCTACTTAGAGTAAATAGTGCAAATTCAAGCCAGAGCAACATGTTGATATTACAAGAGAGTTGCAATGATTCAACGGGCTCTTTTGTGATTTATGCTCCTGTTGATATTGTTGCCATGAATGTAGTTCTAAATGGAGGGGATCCAGATTATGTAGCTCTTCTTCCTTCAGGATTTGCTATCCTCCCAGATGGGACTACAACACATGGAAGTGGCATTGGTGAAACTGGGTCTGGTGGATCTCTCTTGACTGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACTGCTAAGCTTTCTCTTGGATCTGTTGCTACTACTAATGAATTGTGCGTTTACAAGAAGGATAAAGGGAATGTATTGCATTGTGGAAAAACAAAGGTGGTGAGGAACTTAGGCTTATATTACAAGATGTGGGGAGAAGTCAAGAGCGCACCTTGCATGATCCCTTCTCAGTACACCAAAAAGAGTTCTGAGAGGTTTAAGCTTAAGCCTGTAGAAGGAAAAGTGATTAAGAAATTGCTGCGAGATTTGATGCCAATTCAGCAACTGAAGGAAGAGGAAATTGAATTCAGTTTCAAGTATACGGCAGTTCACCTGGCTTTTAAGAAAGCTTCCCCTCTTGCAATACACTACTACCAAAATGATTATCAGGAGGAAGGCAGCATCATGCTACCTATTGAACATGATTAG 2481 0.4309 MEGGQFHPLEMGQNTSESDIPKIREDEFDSATKSCSENHEGVSGEDQEPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNLSPSLPPRPLELGVGAGFGNQPGIGVDMYGGGDLLRSISGPTEADKPLIIELAVAAMEELIGMAQMGEPLWLTTLDGTSTVLNEDEYIRSFPRGIGPKPTGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTVEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSSRCRRRPSGCLIQELPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASSMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCSGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFDFLRDENSRNEWDILSNGGVLQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCNDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTTHGSGIGETGSGGSLLTVAFQILVDSVPTAKLSLGSVATTNELCVYKKDKGNVLHCGKTKVVRNLGLYYKMWGEVKSAPCMIPSQYTKKSSERFKLKPVEGKVIKKLLRDLMPIQQLKEEEIEFSFKYTAVHLAFKKASPLAIHYYQNDYQEEGSIMLPIEHD* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01248 826 Coils Coil 117 137 - -
Rops3g01248 826 SUPERFAMILY Homeodomain-like 42 111 IPR009057 -
Rops3g01248 826 FunFam Homeobox-leucine zipper protein GLABRA 2 244 463 - -
Rops3g01248 826 CDD START_ArGLABRA2_like 239 463 - -
Rops3g01248 826 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Rops3g01248 826 SMART HOX_1 52 115 IPR001356 GO:0003677
Rops3g01248 826 ProSiteProfiles START domain profile. 235 467 IPR002913 GO:0008289
Rops3g01248 826 CDD homeodomain 54 112 IPR001356 GO:0003677
Rops3g01248 826 Pfam Homeodomain 54 109 IPR001356 GO:0003677
Rops3g01248 826 SMART START_1 244 464 IPR002913 GO:0008289
Rops3g01248 826 Gene3D - 291 461 IPR023393 -
Rops3g01248 826 MobiDBLite consensus disorder prediction 19 52 - -
Rops3g01248 826 FunFam Homeobox-leucine zipper protein HDG1 41 127 - -
Rops3g01248 826 SUPERFAMILY Bet v1-like 483 699 - -
Rops3g01248 826 Gene3D - 40 128 - -
Rops3g01248 826 SUPERFAMILY Bet v1-like 235 466 - -
Rops3g01248 826 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Rops3g01248 826 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 52 707 IPR042160 -
Rops3g01248 826 MobiDBLite consensus disorder prediction 1 62 - -
Rops3g01248 826 Pfam START domain 245 464 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01248 Rops-Chr3 17914221 17931916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01248 23 716 Homeobox Transcription Factor Family AT1G05230 79.429 0.0 1135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops3g01248 START 1.8e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01248 K09338 - gmx:100782260 1300.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01248 3 17914221 17931916 Rops3g01248 3 17914221 17931916 ECH
Rops7g00864 7 11588232 11594689 Rops3g01248 3 17914221 17931916 PCT