Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01244 ATGGTTATGGGGAGAACATTGTTCCTCTTGGTTTTATGCTTGTGGGTTACCTCTGAAGTGGTGGGGAGGACAGGACCTTCATCTACCACTGTGAATTCTACTGTTTCTTCTTCAAGACCCAAGGTTGTGAAATTTGGAGCCCTGTTTACTTTGGATTCTGTCATTGGAAGATCGGCTAAACCTGCTATTATGGCTGCCGTTGATGATGTTAATTCGAACAGGAGCATTCTCCCTGGCATTGAACTTCAAGTTATTTTACATGATACAAATTACAGTGGGTTTCTTGGAACATTGGAAGCTCTGCAGTTGATGGAGAATGATGTAGTTGCTGTTGTTGGTCCACAGACATCTGGACTAGCTCACATCATTTCTCATGTTGCTAATGCACTCCATGTACCTCTTCTGTCATTTGGGGCAACTGACCCCACTTTATCAGCCTTGCAATACCCGTATTTTATCCGCACTACTCAGAGTGATTATCATCAGATGTTTGCAATTGCTGACTTTGTTGATTACTTCAGATGGAGAGAGGTAATAGCCATTTATGTAGATGACGACAATGGAAGGAATGGAATTTCTGTGTTGAGTGATGCTTTGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCATTTCCTCCTGAAGCCACAAAAAGTAATATCGGTGACTTGTTAAATGACGTAAACTTAATGGAATCAAGGGTCTATATTCTGCATGTTAATCCTGATTCTGGTTTAGCAATCTTTTCTATTGCCAAGAGGCTAAGAATGATGGGCAATGGCTATGTTTGGATTGCAACAAATTGGCTTCCTTCAGTGCTGGATTCATTAGAGCCAGATGACACTGACACAATGAATCTATTACAAGGGGTTGTGGCTTTTCGTCATCATATTCCTGATACTGATCTCAAGGAGAGTTTTATCTCCAGGTTGAAAAGCCTAAAAGACAAGGAGACTGCAAACTTCAATTCTTATGCATTTTATGCATATGATTCTGTTTGGTTGGTAGCTCGTGCACTTGATGTTTATCTTAAGGAAGGTGGAAATATATCTTTCTCCAATGACCCTAGGTTGCATGACACGGAAGGAAGCATGTTGCATTTATCATCACTTGGTACTTTTGATGGTGGCCAACAGTTTCTCCAGACAATTTTGGGAATGAACTTCACTGGTGTGAGCGGTAAAATTGAGTTTGACATGGACAGGGATTTAATTCATCCAGCATATGATATTCTTAATATTGATGGTAATGAATCCCATGGAATTGGTTATTGGTCTAATCGCTTTGGTCTTTCAGTTATAGCTCCTGAAATTTTATATATGAAAAATTCATCTAACACCTCTTCAACCAGCAATCAACAACTGTACAGTGTGATATGGCCTGGAGAGGCTACAACTACACCAAGGGGATGGGTATTTCCCAACAATGGAAAGCAACTGCGAATAGCAGTGCCTAACCGAGTAAGCTACAAGGAGTTTGTTGCTAAAGACAAGAACCCCCCAGGGGTACATGGCTATTGCATTGATATCTTTGAAGCAGCATTAAACTTGTTGCCCTATCCTGTCCCAAGACGGTATATATTATATGGAAATGGTGAAAGGAATCCTAATTTCAACGACCTTGTGGAACATGTTGCACAAAATAGCTTTGATGCAGTTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATTGTGGATTTTACTCAGCCTTTCATGGAATCAGGGCTTGTTATTGTTGTTCCTGTCAAGGAGGAGAAGTCAAACCCTTGGTCTTTCCTTGAGCCATTCACTACTCAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTCGTGGGAACTGTTGTGTGGATTCTTGAGCACAGGCTCAATCATGAGTTCCGTGGTCCACCAAGGAAACAACTTATAACGGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACAGTGAGTACTCTTGGGCGATTGGTGCTCCTCCTATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTGACATCCATCCTCACTGTGCAGCAACTATCATCACAAATTGAAGGAATTGACAGCTTAATCTCGAGTACTGAACCAATTGGAATTCAAGATGGGTCATTTGCACGGACGTATCTGATAGATGAACTCAATATAGCCGAATCTAGGATAGTTACATTGAAAAACATGCAGGATTATGTTAATGCCCTCCAGCGTGGACCAAAAGGTGGAGGGGTTGTGGCAATTGTTGATGAGCTTCCTTATATTGAGATCTTGATGTCCAAAAGCAACTGTAAGTTCAGAACTGTTGGGCAGGTGTTCACTAAAAGTGGCTGGGGATTCGCATTCCAGAGGGATTCTCCCCTTGTTGTTGACTTGTCAACTGCTATTCTTCAACTCTCTGAGAATGGGGACCTGCAAAAGATTCATGACAAATGGCTTACTGAAAAGGAATGTGTAACCAATGATGTTGATTCAAACATATTATCTCTGACAAGCTTCTGGGGCCTCTTTCTCATATGTGGCATTGCTTGTGTCCTTGCCCTGGTTGTATTCTTTGCTAGAGTGTTCTGTCAATATAACAAGTTCAGTCCTGAGGAAGTTGATGAGGAAATTCAACCAGTCAGGTCCAGACGAACAGGCAGAACTTCTAGCTTGAAGGACTTGGTTGTTTTTGTAGATAAAAGGGAAGAAGAAATCAAAGAGATACTTAGGCAGAACAAAAAAAGGAGACTCAGTAAGAGCTTGGACTTGCAATCAAATTCACCCTCATAA 2796 0.4109 MVMGRTLFLLVLCLWVTSEVVGRTGPSSTTVNSTVSSSRPKVVKFGALFTLDSVIGRSAKPAIMAAVDDVNSNRSILPGIELQVILHDTNYSGFLGTLEALQLMENDVVAVVGPQTSGLAHIISHVANALHVPLLSFGATDPTLSALQYPYFIRTTQSDYHQMFAIADFVDYFRWREVIAIYVDDDNGRNGISVLSDALSKKRAKISYKAAFPPEATKSNIGDLLNDVNLMESRVYILHVNPDSGLAIFSIAKRLRMMGNGYVWIATNWLPSVLDSLEPDDTDTMNLLQGVVAFRHHIPDTDLKESFISRLKSLKDKETANFNSYAFYAYDSVWLVARALDVYLKEGGNISFSNDPRLHDTEGSMLHLSSLGTFDGGQQFLQTILGMNFTGVSGKIEFDMDRDLIHPAYDILNIDGNESHGIGYWSNRFGLSVIAPEILYMKNSSNTSSTSNQQLYSVIWPGEATTTPRGWVFPNNGKQLRIAVPNRVSYKEFVAKDKNPPGVHGYCIDIFEAALNLLPYPVPRRYILYGNGERNPNFNDLVEHVAQNSFDAVVGDVTIVTNRTRIVDFTQPFMESGLVIVVPVKEEKSNPWSFLEPFTTQMWCVTGAFFLFVGTVVWILEHRLNHEFRGPPRKQLITVFWFSFSTMFFSHRENTVSTLGRLVLLLWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTEPIGIQDGSFARTYLIDELNIAESRIVTLKNMQDYVNALQRGPKGGGVVAIVDELPYIEILMSKSNCKFRTVGQVFTKSGWGFAFQRDSPLVVDLSTAILQLSENGDLQKIHDKWLTEKECVTNDVDSNILSLTSFWGLFLICGIACVLALVVFFARVFCQYNKFSPEEVDEEIQPVRSRRTGRTSSLKDLVVFVDKREEEIKEILRQNKKRRLSKSLDLQSNSPS* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01244 931 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Rops3g01244 931 FunFam Glutamate receptor 475 591 - -
Rops3g01244 931 Gene3D - 62 406 - -
Rops3g01244 931 FunFam Glutamate receptor 717 825 - -
Rops3g01244 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 884 IPR015683 -
Rops3g01244 931 FunFam Glutamate receptor 591 721 - -
Rops3g01244 931 SUPERFAMILY Periplasmic binding protein-like II 456 823 - -
Rops3g01244 931 Gene3D - 471 590 - -
Rops3g01244 931 FunFam Glutamate receptor 158 317 - -
Rops3g01244 931 Pfam Receptor family ligand binding region 60 417 IPR001828 -
Rops3g01244 931 SUPERFAMILY Periplasmic binding protein-like I 37 472 IPR028082 -
Rops3g01244 931 CDD GluR_Plant 478 821 - -
Rops3g01244 931 PIRSF IGluLR_plant 1 930 IPR017103 -
Rops3g01244 931 Pfam Ligand-gated ion channel 823 852 IPR001320 GO:0015276|GO:0016020
Rops3g01244 931 Gene3D - 158 431 - -
Rops3g01244 931 CDD PBP1_GABAb_receptor_plant 44 433 IPR044440 -
Rops3g01244 931 Gene3D - 715 825 - -
Rops3g01244 931 Gene3D - 591 712 - -
Rops3g01244 931 Pfam Bacterial extracellular solute-binding proteins, family 3 535 822 IPR001638 -
Rops3g01244 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
Rops3g01244 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Rops3g01244 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01244 Rops-Chr3 17843374 17848826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01244 39 788 Ion Channels AT1G05200 67.867 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01244 K05387 - gmx:100802782 1496.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01244 3 17843374 17848826 Rops3g01244 3 17843374 17848826 ECH
Rops7g00863 7 11563382 11568073 Rops3g01244 3 17843374 17848826 PCT