Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01242 ATGTTGAGTATAGCCCCCGCTGGTAATGGTGGCACAATGGAGCTCATGTACATGCAGACATATGATCCCGCAACATCGGCAACACCAAGGGACTTATGGGCTCTAAGAAGTACTGCATCCACTGTACGAAGTGTCAACAGTGCTGGCTCAGAAGACAACTATGGCAGCCCTACGCCAGCCAAGATACCTGGATGGCTAATAACTTGCCAAAAGATGCCTTCATTGGGGTTGACCCATGGTGCATTTCAATTGATACTGCCTAAAGATGGGAGCGTGCTTTTGCCGAAAAATAACAGAAGTAGCTCTGTTGCGGATAAGTTGAAGGGTTTGGAAAAAAAGCATGCACAAGAGCAAGCTCGGGGGATAATCTTTACAGCACTTGATGAAGTTGCATGGTTGTATAGTATACATAGAAGTAACGTGGCATGCTGTCCAGTTGTTCATGTGTTTGCTATTATGACATCCAATTCTGCTTTCATTTATGTGGACAAACAAAACTATCCACTACAGATGCCAAGACCAGGTGCAAGACCTTATGAGTGTGCGAGGAGAGCTTGGCACAGTGAGAGGCACCAACCCATGAGAGGTTCCATTATTCAACAAATTTTCAAGGTCGTCACTGAAGCTCACCTTACAACTACCAAGAAAAACAAGGAGTGGCAAGAGAAGCTTCTTGTAGTTGTGCTCAAAGCTGAAGAAATCATTTACTCCAAAGCCAATTCTGAGGCTGAGTACCTAAATCTTGACACACTCTGGGACCGTCTCAACGATTCCATTAACATTATCATACGCAGAGAACAGACCATTGAGACTAGAGAGCTTTTGCCACCATGCGTTGAAGCTGCTCTTAACTTGGGTTGCAAGCCGGTGAGAACATCAAGAAGTGATAGGTATAATAATCCCACAACTTACCTTTCCCCAAGAACTCCACAACATCCTGGTTCTGTTTCTTCCAAATCTGCTGATGGGTTCATGCAACTACCTCTTATGAGACAGTTTAGCTGCTCTTCAGCATCACAGCCTTTGGCACTTGAAACTAACCCCTCATTGAACTTGGGTTCCGTTTTCCCATTATACTATGGTTATGAAGCTAAAGAGCCTGTACTAAGGACAAACAACAAAGGAAACACTTGTTCTGACACTGTCTTTGCTGGCAGACCTGTCATTAGTCCAGCCTTGGAACCATCTGCCATGCATCTGTTTGAAAACTTCTCTTATGGTAGAGTCCGTCATGTTCCAAACACTATTGTGAAAGAAAATGTTGTAAGCATTCAGGAGGAGTTGCGAGACAGGGAATGTGATTTGTCTTTGAGGTTGGGTCAATGTTTGCATGCATGTTCCAATGGCAAAACATGTTCAGCATATGAATTGGAGGATGTTGGGTTAGGAGTTTCTCAAGAAGGAAGCAAGTTTGGGCACTCACTTCGATTTCAGCTCTTGCACCACCAAGGCCTACCAGTGTGTCTATCTGCCCTGGAGCTTCACCATTAA 1491 0.444 MLSIAPAGNGGTMELMYMQTYDPATSATPRDLWALRSTASTVRSVNSAGSEDNYGSPTPAKIPGWLITCQKMPSLGLTHGAFQLILPKDGSVLLPKNNRSSSVADKLKGLEKKHAQEQARGIIFTALDEVAWLYSIHRSNVACCPVVHVFAIMTSNSAFIYVDKQNYPLQMPRPGARPYECARRAWHSERHQPMRGSIIQQIFKVVTEAHLTTTKKNKEWQEKLLVVVLKAEEIIYSKANSEAEYLNLDTLWDRLNDSINIIIRREQTIETRELLPPCVEAALNLGCKPVRTSRSDRYNNPTTYLSPRTPQHPGSVSSKSADGFMQLPLMRQFSCSSASQPLALETNPSLNLGSVFPLYYGYEAKEPVLRTNNKGNTCSDTVFAGRPVISPALEPSAMHLFENFSYGRVRHVPNTIVKENVVSIQEELRDRECDLSLRLGQCLHACSNGKTCSAYELEDVGLGVSQEGSKFGHSLRFQLLHHQGLPVCLSALELHH* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01242 496 PANTHER COACTIVATOR CBP, KIX DOMAIN-CONTAINING PROTEIN-RELATED 332 474 - -
Rops3g01242 496 Gene3D - 86 251 IPR029149 -
Rops3g01242 496 MobiDBLite consensus disorder prediction 296 318 - -
Rops3g01242 496 Pfam Creatinase/Prolidase N-terminal domain 92 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01242 Rops-Chr3 17749787 17751873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01242 1 58 Homeobox Transcription Factor Family AT5G60690 43.939 9.37e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01242 - - ccaj:109809361 406.757