Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01240 ATGCCGAGAAAGAAGGTGAACCTTACATACATAAATAGTGACTCGAAGAGGAAGGCAACACTGAAGAAAAGGAGAAATGGATTGTTCAAGAAGATGGATGAAATCAGCACTCTTTGTGGGATCGAAGCATGTGCTATAGTCTATAGCCCAAATGATCCTCGACCAGAGGTTTGGCCATCAGCTGGGGGAGTCCAAACGGTGCTCTCTAGGTTCAGGACAATGCCTGAACTGAAACAAAGCAGAAGGATGCTGAATCAAGAAAACTTCTTGAAGCAAAGTATCCACAAAACTCAAATGCAATTGAAGAAACAAAGAAACGATAACAAGAAGAAAGAAATGACCAATCTCATGTTTGAATGCCTAGATGCTGGCCAAATTTCTAGCAATGTTAACATGACAGATCTGCAAGATCTCTCATTGTTGATTGATCAAAACCTGAAGGAAATTGAAAGGAAGATCAATCAGATCCAAGCTCCAGAGATGATTGAAAATGGAGCAGAAATTTCCGGTGGAGGAGGGGAGGCACAGATGGATCAAGATCAAGTGGTAGAGACCAACATGGATACCATGCAAATGGAGGATTGGTCCATGGACTTCAACAATGATGATTTTCTACCATTTGGATATTTTAACGTCCAAAATGACCTTTGGCCAAATCAACAATTCCCTTGA 672 0.4107 MPRKKVNLTYINSDSKRKATLKKRRNGLFKKMDEISTLCGIEACAIVYSPNDPRPEVWPSAGGVQTVLSRFRTMPELKQSRRMLNQENFLKQSIHKTQMQLKKQRNDNKKKEMTNLMFECLDAGQISSNVNMTDLQDLSLLIDQNLKEIERKINQIQAPEMIENGAEISGGGGEAQMDQDQVVETNMDTMQMEDWSMDFNNDDFLPFGYFNVQNDLWPNQQFP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01240 223 PANTHER MADS BOX PROTEIN 3 155 - -
Rops3g01240 223 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Rops3g01240 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops3g01240 223 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Rops3g01240 223 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops3g01240 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops3g01240 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops3g01240 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops3g01240 223 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
Rops3g01240 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Rops3g01240 223 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01240 Rops-Chr3 17616796 17617614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01240 1 189 Type I MADS-box Gene Family AT5G48670 46.842 1.12e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops3g01240 SRF-TF 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01240 - - gmx:100797590 236.113