LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g01232	ATGGCAGATATCAAAGCGATAATGGTTAAACAAGGGTTCGCATGCTTCACCACCGGAGTGGACAATCCCAACCCCGTATGGAACAGTGAAAATGTCCTGCTAGAAAACCTTCCTGATCTTGTCAACCAACTTTTCTTGGTTGTCATTACCACTCGTTTCTTTTACTTAATCTTCAGACCCTTCCATCAACCTCATTTTGTTGCTGAGATTCTTGCGGCTCTCTTCCTAAATATAAAAGTAAATGGACAATTGCTTCTTCCGGAAATGGTAGGTCCAAAGCAAGTCCATGCTGTGGAAACCTTGGCACATGTGGGTCTCATCTACCATGTCTTCATCAATGGTTTGGAGATGAACTTGGAAACTGTCCTACGAGCGGGAAAGAAGGCAACAACCATTGCTGTTGCTGGCACCTTGATTCCAATGGCATTGGGAGCTGGAATATATTTCTTGTTTCAAAATTTTAGTGTGATGCATGATCAACTTTCACATTTCAATGGACCTGAAGCTTATATAATGTGGACCTTAGTTGTTAGTGTCACAAGTTTCCCCATCTTGGCTCACATCCTTGCGGACCTAAAGATCCTCTACACTGGGCTTGGTAGAGTGGCATTAACATCAGCTACTGTTAATGACTTCTATAATAGGGCTATGTTTGTGCTCTTGGTTCCATTGGCTGTTAATGGTACAAAAGGCTTTTACTCACTGATGGGCACCATAGTTTTTATCCTTTTCTGCTTCTTTGTGCTACGTCCTTCCCTCATGAGGCTATTACTCCTAAATACCAATCAGAATGAAAAGGACAATTACCTGTTATCATATCTGATCATGGGTGTCTTTGTTTGTGCCACTGTTACTGAATTTCTTGGTACAAACTCTGTTGTTGGGGCTTTGGTGTATGGATTGATCCTCCCTCGTGGAAGATTCACTGACATGTTGATAGAGAAATCAGATGATATTGCATCTCGCTGTATGAAGATTGTGAGCACTATAATAGCCACTCGCTTCTATGGAATGCCTCTCCATGATAGCATGGCTCTTGGAGTGCTTATGAACACCAAAGGCGCCTTACCATTCATAATACTAAACATTGCATGGAATAAAAAGATTTTGAGTCATGAGGCCTTTACAATTTTGGTGTACAGTATTCTTGTTATGACTGCAATAGTGTCTCCTATCATCAACGGCATTTACAGGCCAAGAAAGCGACATGAGCAAAATAAGCTAAGGACTATAGAGAACTTAAAGGCAGATTCAGAGATCAGAGTTATGGTTTGTGTACACAATGCTCGCCATGCCAATGGAATGATCAACATCCTTGGAGCTTGCAATGGCACTAACGTTTCCCCTTTACGTGTTTTTGCTCTTCAACTTGCTGAGCTCAAAGGACGTGCCACTGCCCTTCTAGTTTCCCACATAGAGCAATCCACTCCCCAAAAGTGTGGAACACATGAACTTACCAACCCATCAGGATCAAACTCGGAAAGCATCACCGACATTTTTGTAGATTATGCATCTAACCATGAACACACAATTGTGGAGAGCCTTATTGCTATGTCATCCTACACAACCATTCATAAGGACATATACAATTTAGCCTCAGAGAAACAAGCATCATTGGTTCTCCTCCCTTTTCACAAACAATCAAGTGCAGAAGGTACTCTAGAGATAACTGATGCCAGATTCAAAGACATAAACCAAAATCTAATGCAAGATGCACCTTGTTCTGTGGGAATCTTTGTTGATCGTGGTCATGGGGACAAGACCTACTTGCGTACTCTTATGCTCTTCATTGGTGGGCCTGATGACCGTGAAGCCTTAGCTATTGCTTGGAGAATGTCAAAGCATCCAGGGACACAACTCACTGTGGTGAGGATTATTTTGTGTGGAAAAGCTACAGAAGGAGTAGATACATCAACAAAAAGTGAAGTTCAAGGGCTATTATCTGCGATAATAGACAGTGGAAAAGAAAAGGAGTTGGATGAAGGGTTTGTAGGTTCATTTAGACTTAAGGCAGTGAACAATGAGGATTCCATAACTTATGAAGAGATGGAAGTGCACAATGGTGACGATATTACTGAAGTACTTAATCAATTGGACAAAGGAGGCTATGATTTATACATTTTAGGGCAAGGAAAAGGAAGGAACTCTTTGTTATTAGAAAACTTATTGGAATGGACTGATTGCCCTGAACTTGGAGTTATTGGGGACATGTTGGCATCAAATAGTTTTGGTTCAAGCTCTTCAATACTTGTTGTCCAACAATATGGATTTGGGGGAATGGACTTTAAGACTAGTTGTAATAAGCATTCAAATGACGATGATCTTGAGTCACTTTTTCAAAGGAAAAAATGA	2352	0.4094	MADIKAIMVKQGFACFTTGVDNPNPVWNSENVLLENLPDLVNQLFLVVITTRFFYLIFRPFHQPHFVAEILAALFLNIKVNGQLLLPEMVGPKQVHAVETLAHVGLIYHVFINGLEMNLETVLRAGKKATTIAVAGTLIPMALGAGIYFLFQNFSVMHDQLSHFNGPEAYIMWTLVVSVTSFPILAHILADLKILYTGLGRVALTSATVNDFYNRAMFVLLVPLAVNGTKGFYSLMGTIVFILFCFFVLRPSLMRLLLLNTNQNEKDNYLLSYLIMGVFVCATVTEFLGTNSVVGALVYGLILPRGRFTDMLIEKSDDIASRCMKIVSTIIATRFYGMPLHDSMALGVLMNTKGALPFIILNIAWNKKILSHEAFTILVYSILVMTAIVSPIINGIYRPRKRHEQNKLRTIENLKADSEIRVMVCVHNARHANGMINILGACNGTNVSPLRVFALQLAELKGRATALLVSHIEQSTPQKCGTHELTNPSGSNSESITDIFVDYASNHEHTIVESLIAMSSYTTIHKDIYNLASEKQASLVLLPFHKQSSAEGTLEITDARFKDINQNLMQDAPCSVGIFVDRGHGDKTYLRTLMLFIGGPDDREALAIAWRMSKHPGTQLTVVRIILCGKATEGVDTSTKSEVQGLLSAIIDSGKEKELDEGFVGSFRLKAVNNEDSITYEEMEVHNGDDITEVLNQLDKGGYDLYILGQGKGRNSLLLENLLEWTDCPELGVIGDMLASNSFGSSSSILVVQQYGFGGMDFKTSCNKHSNDDDLESLFQRKK*	784

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g01232	783	Gene3D	-	39	321	IPR038770	-
	Rops3g01232	783	Gene3D	-	322	407	IPR038770	-
	Rops3g01232	783	Pfam	Sodium/hydrogen exchanger family	323	392	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Rops3g01232	783	Pfam	Sodium/hydrogen exchanger family	45	320	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Rops3g01232	783	Coils	Coil	783	783	-	-
	Rops3g01232	783	PANTHER	CATION/H + ANTIPORTER	323	755	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g01232	Rops-Chr3	17495728	17499052	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g01232	15	755	Antiporter Super Family	AT2G13620	36.398	3.88e-163	491

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g01232	-		-	mtr:11442852	926.006

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