Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops3g01228 | ATGCCAAGAATTGCACACAACAATAACAATAATGGCAATGTACTCTCGTCAAAAGATGAGGGTGATAATAAGATGAAAGAGGGAATGAAGAAAGGGCCATGGACACCAGCTGAAGATGAGATATTGAGAGAATATGTGATGAAGTATGGTGAGGGGAATTGGAATTGGGTGCAGAAGAATACAGGGTTGGCAAGGTGTGGAAAGAGTTGCAGATTGAGATGGGTCAATCATTTAAAGCCTAATTTGAAAAAAGGTGCATTTTCTAAAGAGGAAGAACAAATTCTCATCCAACTTCATGCAAAGCTAGGAAACAAATGGGCTCAAATGGCTGCACAGTTACCTGGGAGGACAGATAATGAAATAAAAAACTTTTGGAATACCAGAATGAAAAAGCGCCAGAGAGCAGGGTTGCCTCTTTATCCTCCACAGGTCCAACAACACGAATCCAACACATACAATTTACAGCAGAAGCAACACTTCACACAACCTCGCTCTTCATCATCCTTATCATTTTCTTCATTACTATCTTCCTCATACCCTCAAAAGCTCAATGAACTAAGCCACTCTTCCACCACAAATTTCAAACAAAAGGAACCCAGTTCTTCATGCTACACCAATCCACACCCACCATTCAAGTTGCCTCATGAGAAGAGTGGAAGTTCTAGCAACATGGGTTTGCCATTATCCACTGTTTTTTCACATGGGTATTCTTTATTGAACCAGTGTTTTGGTGCTGCAAATGAGTCAACTGATTATCATTCTGGGAGCTACAATCATGGCTTTGATTCAAGTGCTATTGCTCCTGTACAAGGTTCCAACACTGAAGTTTCTTCAAGTCAATCAGCACCTGGCTCCACAACCTCTGCTTCATCCCATGCTAGTGGTGTTTATGGTTTGATGGGAGCTTCAAGTATGGTTAATGGCTATTATGAAGTTGCATCATTATCACCACATCTGGGAAACAGTGGCCTATTGGATGCTATAGTGGTGGAGGGTAAAAGTCTTTCTAGCAATGACATTTCAAAGAGTGAGGATTCAACTGCCACGGGGAAAAAGTTACCTTGTAAGAGGAAAAGCATGGCAGCTGAGGAATATACGGTGGAGAATGACACACTGCTTGTGGAGACAGCTATGAAAAACAGTGGAAACATTACTAATAAGAAACAGAAGATTGATTTGAGCTCTTCTCAATTTTCAACAGGGAAGAAACTAGTGTCTGAGGATTCATTGGAGGGGATGAATTTCATGGATGATGATTTATTTAGCCTGCTCAACAACTTTCCCTCAGAAGTGCCGATGCCTGGCTGGTACAGCAATGGAGAAAGACAATCAATGGGACTTGAAACTCAACAACAAGATGCTTCTTCATCTGGCCCCACTGATAAGGAATTTGCTTGGACTCTTGGAACTTTTTGGAGCAACATGCCTAACATGCTAAATATAGCTTCCTCACAAAATCTGCATTGA | 1467 | 0.4131 | MPRIAHNNNNNGNVLSSKDEGDNKMKEGMKKGPWTPAEDEILREYVMKYGEGNWNWVQKNTGLARCGKSCRLRWVNHLKPNLKKGAFSKEEEQILIQLHAKLGNKWAQMAAQLPGRTDNEIKNFWNTRMKKRQRAGLPLYPPQVQQHESNTYNLQQKQHFTQPRSSSSLSFSSLLSSSYPQKLNELSHSSTTNFKQKEPSSSCYTNPHPPFKLPHEKSGSSSNMGLPLSTVFSHGYSLLNQCFGAANESTDYHSGSYNHGFDSSAIAPVQGSNTEVSSSQSAPGSTTSASSHASGVYGLMGASSMVNGYYEVASLSPHLGNSGLLDAIVVEGKSLSSNDISKSEDSTATGKKLPCKRKSMAAEEYTVENDTLLVETAMKNSGNITNKKQKIDLSSSQFSTGKKLVSEDSLEGMNFMDDDLFSLLNNFPSEVPMPGWYSNGERQSMGLETQQQDASSSGPTDKEFAWTLGTFWSNMPNMLNIASSQNLH* | 489 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops3g01228 | 488 | MobiDBLite | consensus disorder prediction | 186 | 222 | - | - | |
Rops3g01228 | 488 | MobiDBLite | consensus disorder prediction | 442 | 460 | - | - | |
Rops3g01228 | 488 | Pfam | Myb-like DNA-binding domain | 34 | 93 | - | - | |
Rops3g01228 | 488 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 26 | 78 | IPR017930 | - | |
Rops3g01228 | 488 | ProSiteProfiles | Myb-like domain profile. | 26 | 78 | IPR001005 | - | |
Rops3g01228 | 488 | MobiDBLite | consensus disorder prediction | 186 | 207 | - | - | |
Rops3g01228 | 488 | MobiDBLite | consensus disorder prediction | 19 | 34 | - | - | |
Rops3g01228 | 488 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Rops3g01228 | 488 | ProSiteProfiles | Myb-like domain profile. | 79 | 129 | IPR001005 | - | |
Rops3g01228 | 488 | Gene3D | - | 30 | 83 | - | - | |
Rops3g01228 | 488 | SMART | sant | 30 | 80 | IPR001005 | - | |
Rops3g01228 | 488 | SMART | sant | 83 | 131 | IPR001005 | - | |
Rops3g01228 | 488 | MobiDBLite | consensus disorder prediction | 270 | 292 | - | - | |
Rops3g01228 | 488 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 79 | 133 | IPR017930 | - | |
Rops3g01228 | 488 | PANTHER | TRANSCRIPTION FACTOR MYB33-RELATED | 16 | 453 | - | - | |
Rops3g01228 | 488 | SUPERFAMILY | Homeodomain-like | 28 | 125 | IPR009057 | - | |
Rops3g01228 | 488 | MobiDBLite | consensus disorder prediction | 435 | 460 | - | - | |
Rops3g01228 | 488 | Gene3D | - | 86 | 161 | - | - | |
Rops3g01228 | 488 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Rops3g01228 | 488 | FunFam | MYB-related transcription factor | 30 | 83 | - | - | |
Rops3g01228 | 488 | CDD | SANT | 33 | 78 | IPR001005 | - | |
Rops3g01228 | 488 | CDD | SANT | 86 | 127 | IPR001005 | - | |
Rops3g01228 | 488 | FunFam | Transcription factor GAMYB | 86 | 132 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops3g01228 | Rops-Chr3 | 17437084 | 17441826 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops3g01228 | 27 | 146 | MYB Transcription Factor Family | AT2G32460 | 76.667 | 3.54e-65 | 216 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Rops3g01228 | Myb_DNA-bind_6 | 1.2e-14 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops3g01228 | K09422 | - | gmx:100784779 | 465.307 |