Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01228 ATGCCAAGAATTGCACACAACAATAACAATAATGGCAATGTACTCTCGTCAAAAGATGAGGGTGATAATAAGATGAAAGAGGGAATGAAGAAAGGGCCATGGACACCAGCTGAAGATGAGATATTGAGAGAATATGTGATGAAGTATGGTGAGGGGAATTGGAATTGGGTGCAGAAGAATACAGGGTTGGCAAGGTGTGGAAAGAGTTGCAGATTGAGATGGGTCAATCATTTAAAGCCTAATTTGAAAAAAGGTGCATTTTCTAAAGAGGAAGAACAAATTCTCATCCAACTTCATGCAAAGCTAGGAAACAAATGGGCTCAAATGGCTGCACAGTTACCTGGGAGGACAGATAATGAAATAAAAAACTTTTGGAATACCAGAATGAAAAAGCGCCAGAGAGCAGGGTTGCCTCTTTATCCTCCACAGGTCCAACAACACGAATCCAACACATACAATTTACAGCAGAAGCAACACTTCACACAACCTCGCTCTTCATCATCCTTATCATTTTCTTCATTACTATCTTCCTCATACCCTCAAAAGCTCAATGAACTAAGCCACTCTTCCACCACAAATTTCAAACAAAAGGAACCCAGTTCTTCATGCTACACCAATCCACACCCACCATTCAAGTTGCCTCATGAGAAGAGTGGAAGTTCTAGCAACATGGGTTTGCCATTATCCACTGTTTTTTCACATGGGTATTCTTTATTGAACCAGTGTTTTGGTGCTGCAAATGAGTCAACTGATTATCATTCTGGGAGCTACAATCATGGCTTTGATTCAAGTGCTATTGCTCCTGTACAAGGTTCCAACACTGAAGTTTCTTCAAGTCAATCAGCACCTGGCTCCACAACCTCTGCTTCATCCCATGCTAGTGGTGTTTATGGTTTGATGGGAGCTTCAAGTATGGTTAATGGCTATTATGAAGTTGCATCATTATCACCACATCTGGGAAACAGTGGCCTATTGGATGCTATAGTGGTGGAGGGTAAAAGTCTTTCTAGCAATGACATTTCAAAGAGTGAGGATTCAACTGCCACGGGGAAAAAGTTACCTTGTAAGAGGAAAAGCATGGCAGCTGAGGAATATACGGTGGAGAATGACACACTGCTTGTGGAGACAGCTATGAAAAACAGTGGAAACATTACTAATAAGAAACAGAAGATTGATTTGAGCTCTTCTCAATTTTCAACAGGGAAGAAACTAGTGTCTGAGGATTCATTGGAGGGGATGAATTTCATGGATGATGATTTATTTAGCCTGCTCAACAACTTTCCCTCAGAAGTGCCGATGCCTGGCTGGTACAGCAATGGAGAAAGACAATCAATGGGACTTGAAACTCAACAACAAGATGCTTCTTCATCTGGCCCCACTGATAAGGAATTTGCTTGGACTCTTGGAACTTTTTGGAGCAACATGCCTAACATGCTAAATATAGCTTCCTCACAAAATCTGCATTGA 1467 0.4131 MPRIAHNNNNNGNVLSSKDEGDNKMKEGMKKGPWTPAEDEILREYVMKYGEGNWNWVQKNTGLARCGKSCRLRWVNHLKPNLKKGAFSKEEEQILIQLHAKLGNKWAQMAAQLPGRTDNEIKNFWNTRMKKRQRAGLPLYPPQVQQHESNTYNLQQKQHFTQPRSSSSLSFSSLLSSSYPQKLNELSHSSTTNFKQKEPSSSCYTNPHPPFKLPHEKSGSSSNMGLPLSTVFSHGYSLLNQCFGAANESTDYHSGSYNHGFDSSAIAPVQGSNTEVSSSQSAPGSTTSASSHASGVYGLMGASSMVNGYYEVASLSPHLGNSGLLDAIVVEGKSLSSNDISKSEDSTATGKKLPCKRKSMAAEEYTVENDTLLVETAMKNSGNITNKKQKIDLSSSQFSTGKKLVSEDSLEGMNFMDDDLFSLLNNFPSEVPMPGWYSNGERQSMGLETQQQDASSSGPTDKEFAWTLGTFWSNMPNMLNIASSQNLH* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01228 488 MobiDBLite consensus disorder prediction 186 222 - -
Rops3g01228 488 MobiDBLite consensus disorder prediction 442 460 - -
Rops3g01228 488 Pfam Myb-like DNA-binding domain 34 93 - -
Rops3g01228 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 78 IPR017930 -
Rops3g01228 488 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Rops3g01228 488 MobiDBLite consensus disorder prediction 186 207 - -
Rops3g01228 488 MobiDBLite consensus disorder prediction 19 34 - -
Rops3g01228 488 MobiDBLite consensus disorder prediction 1 34 - -
Rops3g01228 488 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Rops3g01228 488 Gene3D - 30 83 - -
Rops3g01228 488 SMART sant 30 80 IPR001005 -
Rops3g01228 488 SMART sant 83 131 IPR001005 -
Rops3g01228 488 MobiDBLite consensus disorder prediction 270 292 - -
Rops3g01228 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Rops3g01228 488 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 16 453 - -
Rops3g01228 488 SUPERFAMILY Homeodomain-like 28 125 IPR009057 -
Rops3g01228 488 MobiDBLite consensus disorder prediction 435 460 - -
Rops3g01228 488 Gene3D - 86 161 - -
Rops3g01228 488 MobiDBLite consensus disorder prediction 1 18 - -
Rops3g01228 488 FunFam MYB-related transcription factor 30 83 - -
Rops3g01228 488 CDD SANT 33 78 IPR001005 -
Rops3g01228 488 CDD SANT 86 127 IPR001005 -
Rops3g01228 488 FunFam Transcription factor GAMYB 86 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01228 Rops-Chr3 17437084 17441826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01228 27 146 MYB Transcription Factor Family AT2G32460 76.667 3.54e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g01228 Myb_DNA-bind_6 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01228 K09422 - gmx:100784779 465.307