Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01225 ATGGGTGTGATTAAGGCTGCCATTGGAGATGCAATTTTGACATCAATATTTGTTTTCAGTATCTCATCTTTAAGGATTCTCTCTTATGAGACAGCTGTTTTTCTTGGTCTTCAAGCAGTTTCACTTGCAGGTCTCTTCATTACTACCATCATAAACACAATCATTATCCTTATGATAAGCTTGATTGGCAGGCTCTTGGGTGGTGCTAGCTTCAACCCCTCATCCACTGTTTCCTTCTACACTGCAGGGCTAAGGCCTGATGCATCTCTTGCATCCATGGCTGTAAGATTTCCTGCTCAAGCAGCAGGTGGAGCTGTTGGTGTCAAGGCTATTCTGCAAGTGATGCCAACTCAGTACAAACACATGCTGAAAGGGCCATCCTTGAAAGTGGACTTGCATACAGGAGCTATAGCTGAAGGGGTGTTAACTTTTTTTCATAACTTAGCTATCCTTTTTGTCATGCTCAAGGGTCCTAAAAACCCATGGTTGAAGGTGTATTTGCTTTCTGTGGCAACTGTGGCTTTGGTTATTCCAGGTTCTGGTTACACGGGGCCTTCTATGAACCCTGCTAATGCCTTTGGATGGGCCTATTTGAACAACAAGCACAATACTTGGGAGCTGTTTTATGTCTATTGGATTTGTCCTTTAATGGGGGCAACCTTAGCTGCTTTGGTCTACAAGTTTCAATTTATGTCACCAACCAAGCAGAAGAAAGCTTGA 720 0.4319 MGVIKAAIGDAILTSIFVFSISSLRILSYETAVFLGLQAVSLAGLFITTIINTIIILMISLIGRLLGGASFNPSSTVSFYTAGLRPDASLASMAVRFPAQAAGGAVGVKAILQVMPTQYKHMLKGPSLKVDLHTGAIAEGVLTFFHNLAILFVMLKGPKNPWLKVYLLSVATVALVIPGSGYTGPSMNPANAFGWAYLNNKHNTWELFYVYWICPLMGATLAALVYKFQFMSPTKQKKA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01225 239 Coils Coil 239 239 - -
Rops3g01225 239 Gene3D Glycerol uptake facilitator protein. 2 238 IPR023271 -
Rops3g01225 239 PRINTS Major intrinsic protein family signature 52 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g01225 239 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g01225 239 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g01225 239 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g01225 239 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g01225 239 PANTHER AQUAPORIN SIP1-1 1 238 IPR044222 GO:0015250
Rops3g01225 239 SUPERFAMILY Aquaporin-like 3 233 IPR023271 -
Rops3g01225 239 Pfam Major intrinsic protein 4 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01225 Rops-Chr3 17405472 17406565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01225 1 227 Major Intrinsic Protein MIP AT3G04090 45.690 1.12e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01225 K09875 - gmx:100797126 338.576