Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01223 ATGGAGCTTCGTTCTCGTCGACGCCTTTCTAATACCATCGTTTCCGAGGCAGGGAAGGGGAAGGAGAAGGAGAAGCAGCAAGTTGAAACCAATGGCCAGAGCAGCAATGACACCGATGAAGATGTTGATTGTATATCTGCAAATTCAGATTCCAATTATGAAGATGAAGAAGACTTTGGTGGAAACTCCCTTTTAGACTTGAATCAAGGTCCAGCTTCAAGCAATAGTGTTTCTAAGGGAGAAGATTATACTTCTGATTCATCTGATGGTAGCAAGCCTTCATCTAAAAGGAGAAAGACACAGTCTGGAAGCAAAAGAAAAAAACTCAACTTGAAAATTGGAGAAATGAGTGATGGGGATGAGGAAACTTTAGTGGTTTCCCATCAATCAGTTCACATCAATTTGACTAATGTGAACATGAAGACAAAAACGAAAAAAACAAGAAAGGGAGATACTAAGACAGTGTTATTGTGGAATGCTTGGGAAGAGGAGCATGAGAGATGGATTGATGAGAACTTGTCGGAAGATGTTAACTTAGATCCTGACAGTGAAGTGATGAATGAAACTGCTGAGGCATCCTCAGATCTGACTATGCCTTTGCTAAGGTACCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGCAACTAGAGGAGGAATCCTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCCCTTGTCCTTGCCAAACGTGAATTTTATCAAATGAATTGCGAACCAGATAAACCATCACCTTCACCAGGGTCTTCTAGAATCTTGCCTGCGATCAAAGGAACACTCGTCATTTGTCCTGTTGTTGCTGTTACTCAGTGGATAAGTGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCAAGGAGAGAGAAGAGTGGGGAACAGTTCTCGGAGTATGATTTTGTAATAACAACATACTCTATTGTTGAGTCTGAGTACAGAAAGTACATGATGCCTCCTAAGGAGAGGTGCCCATATTGTGGAAAATTATTTTACCAGAACAAGTTATCTTATCACCAGAGGTATTTTTGTGGGCCTGATGCTGCCAGAACAGAAAAACAATCAAAGCAATCTAAGAAAAAGAAAACAGATACTACTAAACAGAAGATCGAAGAACCGAACCATTGGGATGGAGAACTGGAACATGGTTTTATCAAGAAAAAGGTAAAGGGAACGAACTTCACAATAGAAGAATCCGATGCAATAGGTAGGGAGAAGTCATTTCTACATGCTGTAAAGTGGCAGAGGATCATACTGGATGAGGCGCACTATATAAAATCTAGACATTGTAACACTGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAGATGGGCATTAAGTGGCACACCCCTTCAGAACCGTGTTGGAGAGCTATATTCTCTGGTACGGTTTCTGCAGATAGTTCCGTATTCCTATTACTTGTGCAAGGATTGTGATTGCAGGACACTTGATCATAGCTCCTCTAAACAATGTTCAAACTGCTCCCACAGTTCTGTCAGACATTTCTGTTGGTGGAACAAATATGTTGCTACACCAATTCAATCATATGGATCTGGCGATAGTGGAAGAAGAGCTATGATATTGCTTAAACACAAAATTTTGAAGAACATAGTTCTAAGGCGCACAAAAATAGGCAGGGCTGCCGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGGAGGGATACCCTGGATATAAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAGTTTAATACATATATCGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTACGCCAGGCTGTTGATCATCCATACCTTGTTGTATATTCTCCAACTGCAGCATTAAAAGGTGGGAACTTGGCCAGTAATGGTAATGCTGAACAAACATGTGGCCTTTGTCATGAGGCAGTTGAAGATCCTGTGGTTACCTCTTGTGAGCATATTTTTTGCAAGGGATGCTTGATAGACTTCTCTGCTTCCTTGGGGCGGATATCATGCCCCTCATGCTCTAAATTACTAACAGTTGATTTAACTTCAAACAAGGATGTTGGGGCCCAGGCTAATAGTAAAACAACAATTAAAGGTTTTAGATCTTCAAGCATTTTGAACAGAATTCAGCTCGAGAACTTTCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATAAACTACTCCCTGCACAAGTCAGGTGTATCTTGTGTTCAGTTGAATGGAAGCATGACATTGGCTGCTCGGGATGCTGCCATTAAGAGATTTACTGTTGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGCGGTGTTGCTCTCAATTTGACCGTTGCATCATATGTTTTCCTTATGGACCCTTGGTGGAACCCTGCGGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTTATTGAGAACACAATCGAGGAGAGGATTTTGAAACTCCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATAGGCGGCTCCTCTGAGGCTTTGGGGAAATTGACGGAGGCCGACTTGAGATTTCTCTTTGTCACCTAA 2742 0.4132 MELRSRRRLSNTIVSEAGKGKEKEKQQVETNGQSSNDTDEDVDCISANSDSNYEDEEDFGGNSLLDLNQGPASSNSVSKGEDYTSDSSDGSKPSSKRRKTQSGSKRKKLNLKIGEMSDGDEETLVVSHQSVHINLTNVNMKTKTKKTRKGDTKTVLLWNAWEEEHERWIDENLSEDVNLDPDSEVMNETAEASSDLTMPLLRYQKEWLAWALKQENSATRGGILADEMGMGKTIQAIALVLAKREFYQMNCEPDKPSPSPGSSRILPAIKGTLVICPVVAVTQWISEIDRFTLKGSTKVLVYHGARREKSGEQFSEYDFVITTYSIVESEYRKYMMPPKERCPYCGKLFYQNKLSYHQRYFCGPDAARTEKQSKQSKKKKTDTTKQKIEEPNHWDGELEHGFIKKKVKGTNFTIEESDAIGREKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRTLDHSSSKQCSNCSHSSVRHFCWWNKYVATPIQSYGSGDSGRRAMILLKHKILKNIVLRRTKIGRAADLALPPRIVSLRRDTLDIKEQDYYESLYNESQAQFNTYIEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSPTAALKGGNLASNGNAEQTCGLCHEAVEDPVVTSCEHIFCKGCLIDFSASLGRISCPSCSKLLTVDLTSNKDVGAQANSKTTIKGFRSSSILNRIQLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMTLAARDAAIKRFTVDPDCKIFLMSLKAGGVALNLTVASYVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLRFLFVT* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01223 913 Gene3D - 576 911 IPR027417 -
Rops3g01223 913 MobiDBLite consensus disorder prediction 66 90 - -
Rops3g01223 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 724 IPR013083 -
Rops3g01223 913 SMART ring_2 658 697 IPR001841 -
Rops3g01223 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 911 IPR027417 -
Rops3g01223 913 MobiDBLite consensus disorder prediction 1 110 - -
Rops3g01223 913 Gene3D - 202 342 IPR038718 -
Rops3g01223 913 Pfam Zinc finger, C3HC4 type (RING finger) 658 697 IPR018957 GO:0046872
Rops3g01223 913 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 50 911 - -
Rops3g01223 913 CDD SF2_C_SNF 741 868 - -
Rops3g01223 913 CDD DEXDc_SHPRH-like 200 560 - -
Rops3g01223 913 Pfam SNF2-related domain 214 635 IPR000330 GO:0005524|GO:0140658
Rops3g01223 913 Pfam Helicase conserved C-terminal domain 743 857 IPR001650 -
Rops3g01223 913 SMART ultradead3 196 505 IPR014001 -
Rops3g01223 913 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 903 IPR001650 -
Rops3g01223 913 MobiDBLite consensus disorder prediction 29 49 - -
Rops3g01223 913 ProSiteProfiles Zinc finger RING-type profile. 658 698 IPR001841 -
Rops3g01223 913 SUPERFAMILY RING/U-box 651 702 - -
Rops3g01223 913 Gene3D - 367 575 IPR038718 -
Rops3g01223 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 560 IPR027417 -
Rops3g01223 913 ProSitePatterns Zinc finger RING-type signature. 673 682 IPR017907 -
Rops3g01223 913 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 487 IPR014001 -
Rops3g01223 913 Coils Coil 730 750 - -
Rops3g01223 913 SMART helicmild6 774 857 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01223 Rops-Chr3 17319935 17328528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01223 135 913 RAD5 or RAD16-like Gene Family AT1G05120 67.771 0.0 1095
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops3g01223 SNF2_N 1.6e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01223 K15083 - gmx:100786366 1333.16